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PIWIL3 (piwi-like RNA-mediated gene silencing 3)

Identity

Alias_namespiwi-like 3 (Drosophila)
Alias_symbol (synonym)HIWI3
Other alias
HGNC (Hugo) PIWIL3
LocusID (NCBI) 440822
Atlas_Id 53988
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 25115001 and ends at 25170687 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIWIL3   18443
Cards
Entrez_Gene (NCBI)PIWIL3  440822  piwi-like RNA-mediated gene silencing 3
AliasesHIWI3
GeneCards (Weizmann)PIWIL3
Ensembl hg19 (Hinxton)ENSG00000184571 [Gene_View]  chr22:25115001-25170687 [Contig_View]  PIWIL3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184571 [Gene_View]  chr22:25115001-25170687 [Contig_View]  PIWIL3 [Vega]
ICGC DataPortalENSG00000184571
TCGA cBioPortalPIWIL3
AceView (NCBI)PIWIL3
Genatlas (Paris)PIWIL3
WikiGenes440822
SOURCE (Princeton)PIWIL3
Genetics Home Reference (NIH)PIWIL3
Genomic and cartography
GoldenPath hg19 (UCSC)PIWIL3  -     chr22:25115001-25170687 -  22q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIWIL3  -     22q11.23   [Description]    (hg38-Dec_2013)
EnsemblPIWIL3 - 22q11.23 [CytoView hg19]  PIWIL3 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIPIWIL3 [Mapview hg19]  PIWIL3 [Mapview hg38]
OMIM610314   
Gene and transcription
Genbank (Entrez)AB079368 AK302409 AK315806 BC144693 BC144696
RefSeq transcript (Entrez)NM_001008496 NM_001255975
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)PIWIL3
Cluster EST : UnigeneHs.448343 [ NCBI ]
CGAP (NCI)Hs.448343
Alternative Splicing GalleryENSG00000184571
Gene ExpressionPIWIL3 [ NCBI-GEO ]   PIWIL3 [ EBI - ARRAY_EXPRESS ]   PIWIL3 [ SEEK ]   PIWIL3 [ MEM ]
Gene Expression Viewer (FireBrowse)PIWIL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440822
GTEX Portal (Tissue expression)PIWIL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3Z3
Splice isoforms : SwissVarQ7Z3Z3
PhosPhoSitePlusQ7Z3Z3
Domaine pattern : Prosite (Expaxy)PAZ (PS50821)    PIWI (PS50822)   
Domains : Interpro (EBI)Argonaute_N    PAZ_dom    Piwi    RNaseH-like_dom   
Domain families : Pfam (Sanger)ArgoN (PF16486)    PAZ (PF02170)    Piwi (PF02171)   
Domain families : Pfam (NCBI)pfam16486    pfam02170    pfam02171   
Domain families : Smart (EMBL)PAZ (SM00949)  Piwi (SM00950)  
Conserved Domain (NCBI)PIWIL3
DMDM Disease mutations440822
Blocks (Seattle)PIWIL3
SuperfamilyQ7Z3Z3
Human Protein AtlasENSG00000184571
Peptide AtlasQ7Z3Z3
HPRD17855
IPIIPI00455515   IPI00979401   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3Z3
IntAct (EBI)Q7Z3Z3
FunCoupENSG00000184571
BioGRIDPIWIL3
STRING (EMBL)PIWIL3
ZODIACPIWIL3
Ontologies - Pathways
QuickGOQ7Z3Z3
Ontology : AmiGORNA binding  cytoplasm  regulation of translation  multicellular organism development  spermatogenesis  cell differentiation  gene silencing by RNA  meiotic cell cycle  
Ontology : EGO-EBIRNA binding  cytoplasm  regulation of translation  multicellular organism development  spermatogenesis  cell differentiation  gene silencing by RNA  meiotic cell cycle  
Pathways : KEGGDorso-ventral axis formation   
NDEx NetworkPIWIL3
Atlas of Cancer Signalling NetworkPIWIL3
Wikipedia pathwaysPIWIL3
Orthology - Evolution
OrthoDB440822
GeneTree (enSembl)ENSG00000184571
Phylogenetic Trees/Animal Genes : TreeFamPIWIL3
HOVERGENQ7Z3Z3
HOGENOMQ7Z3Z3
Homologs : HomoloGenePIWIL3
Homology/Alignments : Family Browser (UCSC)PIWIL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIWIL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIWIL3
dbVarPIWIL3
ClinVarPIWIL3
1000_GenomesPIWIL3 
Exome Variant ServerPIWIL3
ExAC (Exome Aggregation Consortium)PIWIL3 (select the gene name)
Genetic variants : HAPMAP440822
Genomic Variants (DGV)PIWIL3 [DGVbeta]
DECIPHER (Syndromes)22:25115001-25170687  ENSG00000184571
CONAN: Copy Number AnalysisPIWIL3 
Mutations
ICGC Data PortalPIWIL3 
TCGA Data PortalPIWIL3 
Broad Tumor PortalPIWIL3
OASIS PortalPIWIL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIWIL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIWIL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIWIL3
DgiDB (Drug Gene Interaction Database)PIWIL3
DoCM (Curated mutations)PIWIL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIWIL3 (select a term)
intoGenPIWIL3
Cancer3DPIWIL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610314   
Orphanet
MedgenPIWIL3
Genetic Testing Registry PIWIL3
NextProtQ7Z3Z3 [Medical]
TSGene440822
GENETestsPIWIL3
Huge Navigator PIWIL3 [HugePedia]
snp3D : Map Gene to Disease440822
BioCentury BCIQPIWIL3
ClinGenPIWIL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440822
Chemical/Pharm GKB GenePA38332
Clinical trialPIWIL3
Miscellaneous
canSAR (ICR)PIWIL3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIWIL3
EVEXPIWIL3
GoPubMedPIWIL3
iHOPPIWIL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:29 CEST 2017

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