Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PJA1 (praja ring finger ubiquitin ligase 1)

Identity

Alias_namespraja 1
praja ring finger 1
praja ring finger 1, E3 ubiquitin protein ligase
Alias_symbol (synonym)FLJ11830
RNF70
Other aliasPRAJA1
HGNC (Hugo) PJA1
LocusID (NCBI) 64219
Atlas_Id 71935
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 69160738 and ends at 69165522 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PJA1   16648
Cards
Entrez_Gene (NCBI)PJA1  64219  praja ring finger ubiquitin ligase 1
AliasesPRAJA1; RNF70
GeneCards (Weizmann)PJA1
Ensembl hg19 (Hinxton)ENSG00000181191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181191 [Gene_View]  chrX:69160738-69165522 [Contig_View]  PJA1 [Vega]
ICGC DataPortalENSG00000181191
TCGA cBioPortalPJA1
AceView (NCBI)PJA1
Genatlas (Paris)PJA1
WikiGenes64219
SOURCE (Princeton)PJA1
Genetics Home Reference (NIH)PJA1
Genomic and cartography
GoldenPath hg38 (UCSC)PJA1  -     chrX:69160738-69165522 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PJA1  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblPJA1 - Xq13.1 [CytoView hg19]  PJA1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIPJA1 [Mapview hg19]  PJA1 [Mapview hg38]
OMIM300420   
Gene and transcription
Genbank (Entrez)AF262024 AF264620 AK021892 AK096611 AK226171
RefSeq transcript (Entrez)NM_001032396 NM_022368 NM_145119
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PJA1
Cluster EST : UnigeneHs.522679 [ NCBI ]
CGAP (NCI)Hs.522679
Alternative Splicing GalleryENSG00000181191
Gene ExpressionPJA1 [ NCBI-GEO ]   PJA1 [ EBI - ARRAY_EXPRESS ]   PJA1 [ SEEK ]   PJA1 [ MEM ]
Gene Expression Viewer (FireBrowse)PJA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64219
GTEX Portal (Tissue expression)PJA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG27
Splice isoforms : SwissVarQ8NG27
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8NG27
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PJA1    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)PJA1
DMDM Disease mutations64219
Blocks (Seattle)PJA1
PDB (SRS)2L0B   
PDB (PDBSum)2L0B   
PDB (IMB)2L0B   
PDB (RSDB)2L0B   
Structural Biology KnowledgeBase2L0B   
SCOP (Structural Classification of Proteins)2L0B   
CATH (Classification of proteins structures)2L0B   
SuperfamilyQ8NG27
Human Protein AtlasENSG00000181191
Peptide AtlasQ8NG27
HPRD02335
IPIIPI00294448   IPI00251615   IPI01013362   IPI00651771   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG27
IntAct (EBI)Q8NG27
FunCoupENSG00000181191
BioGRIDPJA1
STRING (EMBL)PJA1
ZODIACPJA1
Ontologies - Pathways
QuickGOQ8NG27
Ontology : AmiGOprotein binding  cytoplasm  zinc ion binding  protein ubiquitination  protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein binding  cytoplasm  zinc ion binding  protein ubiquitination  protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkPJA1
Atlas of Cancer Signalling NetworkPJA1
Wikipedia pathwaysPJA1
Orthology - Evolution
OrthoDB64219
GeneTree (enSembl)ENSG00000181191
Phylogenetic Trees/Animal Genes : TreeFamPJA1
HOVERGENQ8NG27
HOGENOMQ8NG27
Homologs : HomoloGenePJA1
Homology/Alignments : Family Browser (UCSC)PJA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPJA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PJA1
dbVarPJA1
ClinVarPJA1
1000_GenomesPJA1 
Exome Variant ServerPJA1
ExAC (Exome Aggregation Consortium)PJA1 (select the gene name)
Genetic variants : HAPMAP64219
Genomic Variants (DGV)PJA1 [DGVbeta]
DECIPHERPJA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPJA1 
Mutations
ICGC Data PortalPJA1 
TCGA Data PortalPJA1 
Broad Tumor PortalPJA1
OASIS PortalPJA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPJA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPJA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PJA1
DgiDB (Drug Gene Interaction Database)PJA1
DoCM (Curated mutations)PJA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PJA1 (select a term)
intoGenPJA1
Cancer3DPJA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300420   
Orphanet
MedgenPJA1
Genetic Testing Registry PJA1
NextProtQ8NG27 [Medical]
TSGene64219
GENETestsPJA1
Target ValidationPJA1
Huge Navigator PJA1 [HugePedia]
snp3D : Map Gene to Disease64219
BioCentury BCIQPJA1
ClinGenPJA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64219
Chemical/Pharm GKB GenePA33342
Clinical trialPJA1
Miscellaneous
canSAR (ICR)PJA1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePJA1
EVEXPJA1
GoPubMedPJA1
iHOPPJA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:26 CEST 2017

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