Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PKD1P1 (polycystin 1, transient receptor potential channel interacting pseudogene 1)

Identity

Alias_namespolycystic kidney disease 1 (autosomal dominant) pseudogene 1
Other aliasHG1
NPIP
HGNC (Hugo) PKD1P1
LocusID (NCBI) 339044
Atlas_Id 71938
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 16317609 and ends at 16350608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PKD1P1 (16p13.11) / PKD1P2 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PKD1P1   30065
Cards
Entrez_Gene (NCBI)PKD1P1  339044  polycystin 1, transient receptor potential channel interacting pseudogene 1
AliasesHG1; NPIP
GeneCards (Weizmann)PKD1P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:16317609-16350608 [Contig_View]  PKD1P1 [Vega]
TCGA cBioPortalPKD1P1
AceView (NCBI)PKD1P1
Genatlas (Paris)PKD1P1
WikiGenes339044
SOURCE (Princeton)PKD1P1
Genetics Home Reference (NIH)PKD1P1
Genomic and cartography
GoldenPath hg38 (UCSC)PKD1P1  -     chr16:16317609-16350608 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PKD1P1  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblPKD1P1 - 16p13.11 [CytoView hg19]  PKD1P1 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIPKD1P1 [Mapview hg19]  PKD1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF229069 AK124516 AK126798 AK294825 AK298381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_002797 NT_187607
Consensus coding sequences : CCDS (NCBI)PKD1P1
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Gene ExpressionPKD1P1 [ NCBI-GEO ]   PKD1P1 [ EBI - ARRAY_EXPRESS ]   PKD1P1 [ SEEK ]   PKD1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)PKD1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339044
GTEX Portal (Tissue expression)PKD1P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKD1P1
DMDM Disease mutations339044
Blocks (Seattle)PKD1P1
IPIIPI00333979   IPI00412337   
Protein Interaction databases
BioGRIDPKD1P1
STRING (EMBL)PKD1P1
ZODIACPKD1P1
Ontologies - Pathways
Huge Navigator PKD1P1 [HugePedia]
snp3D : Map Gene to Disease339044
BioCentury BCIQPKD1P1
ClinGenPKD1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339044
Chemical/Pharm GKB GenePA134993778
Clinical trialPKD1P1
Miscellaneous
canSAR (ICR)PKD1P1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKD1P1
EVEXPKD1P1
GoPubMedPKD1P1
iHOPPKD1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:08 CET 2017

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