Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PKD1P2 (polycystin 1, transient receptor potential channel interacting pseudogene 2)

Identity

Alias_namespolycystic kidney disease 1 (autosomal dominant) pseudogene 2
Other aliasHG2
HGNC (Hugo) PKD1P2
LocusID (NCBI) 283955
Atlas_Id 77254
Location 16_KI270853v1_alt  [Link to chromosome band 16]
Location_base_pair Starts at 2032187 and ends at 2036886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)PKD1P2   30066
Cards
Entrez_Gene (NCBI)PKD1P2  283955  polycystin 1, transient receptor potential channel interacting pseudogene 2
AliasesHG2
GeneCards (Weizmann)PKD1P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr16_KI270853v1_alt:2032187-2036886 [Contig_View]  PKD1P2 [Vega]
TCGA cBioPortalPKD1P2
AceView (NCBI)PKD1P2
Genatlas (Paris)PKD1P2
WikiGenes283955
SOURCE (Princeton)PKD1P2
Genetics Home Reference (NIH)PKD1P2
Genomic and cartography
GoldenPath hg38 (UCSC)PKD1P2  -     chr16_KI270853v1_alt:2032187-2036886 +  16_KI270853v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PKD1P2  -     16_KI270853v1_alt   [Description]    (hg19-Feb_2009)
EnsemblPKD1P2 - 16_KI270853v1_alt [CytoView hg19]  PKD1P2 - 16_KI270853v1_alt [CytoView hg38]
Mapping of homologs : NCBIPKD1P2 [Mapview hg19]  PKD1P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK310228
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_002795 NT_187607
Consensus coding sequences : CCDS (NCBI)PKD1P2
Cluster EST : UnigeneHs.634612 [ NCBI ]
CGAP (NCI)Hs.634612
Gene ExpressionPKD1P2 [ NCBI-GEO ]   PKD1P2 [ EBI - ARRAY_EXPRESS ]   PKD1P2 [ SEEK ]   PKD1P2 [ MEM ]
Gene Expression Viewer (FireBrowse)PKD1P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283955
GTEX Portal (Tissue expression)PKD1P2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKD1P2
DMDM Disease mutations283955
Blocks (Seattle)PKD1P2
Protein Interaction databases
BioGRIDPKD1P2
STRING (EMBL)PKD1P2
ZODIACPKD1P2
Ontologies - Pathways
Huge Navigator PKD1P2 [HugePedia]
snp3D : Map Gene to Disease283955
BioCentury BCIQPKD1P2
ClinGenPKD1P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283955
Chemical/Pharm GKB GenePA134985064
Clinical trialPKD1P2
Miscellaneous
canSAR (ICR)PKD1P2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKD1P2
EVEXPKD1P2
GoPubMedPKD1P2
iHOPPKD1P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:24:01 CEST 2018
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