Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PKD1P5-LOC105376752 (PKD1P5-LOC105376752 readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 110006322
Atlas_Id 78956
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18358105 and ends at 18401925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)PKD1P5-LOC105376752  110006322  PKD1P5-LOC105376752 readthrough
Aliases
GeneCards (Weizmann)PKD1P5-LOC105376752
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:18358105-18401925 [Contig_View]  PKD1P5-LOC105376752 [Vega]
TCGA cBioPortalPKD1P5-LOC105376752
AceView (NCBI)PKD1P5-LOC105376752
Genatlas (Paris)PKD1P5-LOC105376752
WikiGenes110006322
SOURCE (Princeton)PKD1P5-LOC105376752
Genetics Home Reference (NIH)PKD1P5-LOC105376752
Genomic and cartography
GoldenPath hg38 (UCSC)PKD1P5-LOC105376752  -     chr16:18358105-18401925 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PKD1P5-LOC105376752  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblPKD1P5-LOC105376752 - 16p12.3 [CytoView hg19]  PKD1P5-LOC105376752 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIPKD1P5-LOC105376752 [Mapview hg19]  PKD1P5-LOC105376752 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK304604 BF058389 HY253686
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PKD1P5-LOC105376752
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Gene ExpressionPKD1P5-LOC105376752 [ NCBI-GEO ]   PKD1P5-LOC105376752 [ EBI - ARRAY_EXPRESS ]   PKD1P5-LOC105376752 [ SEEK ]   PKD1P5-LOC105376752 [ MEM ]
Gene Expression Viewer (FireBrowse)PKD1P5-LOC105376752 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)110006322
GTEX Portal (Tissue expression)PKD1P5-LOC105376752
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKD1P5-LOC105376752
DMDM Disease mutations110006322
Blocks (Seattle)PKD1P5-LOC105376752
Protein Interaction databases
BioGRIDPKD1P5-LOC105376752
STRING (EMBL)PKD1P5-LOC105376752
ZODIACPKD1P5-LOC105376752
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease110006322
BioCentury BCIQPKD1P5-LOC105376752
ClinGenPKD1P5-LOC105376752
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD110006322
Clinical trialPKD1P5-LOC105376752
Miscellaneous
canSAR (ICR)PKD1P5-LOC105376752 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKD1P5-LOC105376752
EVEXPKD1P5-LOC105376752
GoPubMedPKD1P5-LOC105376752
iHOPPKD1P5-LOC105376752
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:58:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.