Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PKD1P6 (polycystic kidney disease 1 (autosomal dominant) pseudogene 6)

Identity

Alias_namespolycystic kidney disease 1 (autosomal dominant) pseudogene 6
Other aliasHG6
HGNC (Hugo) PKD1P6
LocusID (NCBI) 353511
Atlas_Id 71939
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15198159 and ends at 15230816 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PKD1P6   30070
Cards
Entrez_Gene (NCBI)PKD1P6  353511  polycystic kidney disease 1 (autosomal dominant) pseudogene 6
AliasesHG6
GeneCards (Weizmann)PKD1P6
Ensembl hg19 (Hinxton)ENSG00000270580 [Gene_View]  chr16:15198159-15230816 [Contig_View]  PKD1P6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000270580 [Gene_View]  chr16:15198159-15230816 [Contig_View]  PKD1P6 [Vega]
ICGC DataPortalENSG00000270580
TCGA cBioPortalPKD1P6
AceView (NCBI)PKD1P6
Genatlas (Paris)PKD1P6
WikiGenes353511
SOURCE (Princeton)PKD1P6
Genetics Home Reference (NIH)PKD1P6
Genomic and cartography
GoldenPath hg19 (UCSC)PKD1P6  -     chr16:15198159-15230816 -  16p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PKD1P6  -     16p13.11   [Description]    (hg38-Dec_2013)
EnsemblPKD1P6 - 16p13.11 [CytoView hg19]  PKD1P6 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIPKD1P6 [Mapview hg19]  PKD1P6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA308851 AK023376 AK131084 AK131085 AK302708
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_002799 NT_010393 NT_187607 NW_004929400
Consensus coding sequences : CCDS (NCBI)PKD1P6
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Alternative Splicing GalleryENSG00000270580
Gene ExpressionPKD1P6 [ NCBI-GEO ]   PKD1P6 [ EBI - ARRAY_EXPRESS ]   PKD1P6 [ SEEK ]   PKD1P6 [ MEM ]
Gene Expression Viewer (FireBrowse)PKD1P6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)353511
GTEX Portal (Tissue expression)PKD1P6
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKD1P6
DMDM Disease mutations353511
Blocks (Seattle)PKD1P6
Human Protein AtlasENSG00000270580
Protein Interaction databases
FunCoupENSG00000270580
BioGRIDPKD1P6
STRING (EMBL)PKD1P6
ZODIACPKD1P6
Ontologies - Pathways
Huge Navigator PKD1P6 [HugePedia]
snp3D : Map Gene to Disease353511
BioCentury BCIQPKD1P6
ClinGenPKD1P6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353511
Chemical/Pharm GKB GenePA134872166
Clinical trialPKD1P6
Miscellaneous
canSAR (ICR)PKD1P6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKD1P6
EVEXPKD1P6
GoPubMedPKD1P6
iHOPPKD1P6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:44 CET 2017

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