PKNOX1 (PBX/knotted 1 homeobox 1)

Identity

Other names	PREP1
	pkonx1c
HGNC	PKNOX1
Location	21q22.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PKNOX1   9022
Entrez_Gene	PKNOX1  5316  PBX/knotted 1 homeobox 1
	Cards
GeneCards	PKNOX1
Ensembl	PKNOX1 [Search_View]   ENSG00000160199 [Gene_View]
Genatlas	PKNOX1
GeneLynx	PKNOX1
eGenome	PKNOX1
euGene	5316
	Genomic and cartography
GoldenPath	PKNOX1  -  21q22.3   chr21:43267712-43326757 +  21q22.3   [Description]    (hg18-March_2006)
Ensembl	PKNOX1 - 21q22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PKNOX1
	Gene and transcription
Genbank	AA133342 [ ENTREZ ]
Genbank	AK222892 [ ENTREZ ]
Genbank	AY142115 [ ENTREZ ]
Genbank	AY196965 [ ENTREZ ]
Genbank	AY566249 [ ENTREZ ]
RefSeq	NM_004571 [ SRS ]    NM_004571 [ ENTREZ ]
RefSeq	AC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeq	AC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeq	NC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeq	NT_030188 [ SRS ]    NT_030188 [ ENTREZ ]
RefSeq	NW_001838715 [ SRS ]    NW_001838715 [ ENTREZ ]
RefSeq	NW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
AceView	PKNOX1 AceView - NCBI
Unigene	Hs.431043 [ SRS ]    Hs.431043 [ NCBI ]     HS431043 [ spliceNest ]
Fast-db	18028 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P55347 [ SRS]    P55347 [ EXPASY ]     P55347 [ INTERPRO ]     P55347 [ UNIPROT ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
CluSTr	P55347
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	P55347 PKNX1_HUMAN [ Domain structure ]   P55347 PKNX1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P55347
PDB	1X2N [ SRS ]    1X2N [ PdbSum ],   1X2N [ IMB ]   1X2N [ RSDB ]
HPRD	03653
	Protein Interaction databases
DIP	P55347
IntAct	P55347
	Polymorphism : SNP, mutations, diseases
OMIM	602100    [ map ]
GENECLINICS	602100
SNP	PKNOX1 [dbSNP-NCBI]
SNP	NM_004571 [SNP-NCI]
SNP	PKNOX1 [GeneSNPs - Utah]  PKNOX1] [HGBASE - SRS]
HAPMAP	PKNOX1 [HAPMAP]
HGMD	PKNOX1
	General knowledge
Family Browser	PKNOX1 [UCSC Family Browser]
SOURCE	NM_004571
SMD	Hs.431043
SAGE	Hs.431043
GO	specific RNA polymerase II transcription factor activity [Amigo]  specific RNA polymerase II transcription factor activity
GO	RNA polymerase II transcription factor activity, enhancer binding [Amigo]  RNA polymerase II transcription factor activity, enhancer binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	transcription factor complex [Amigo]  transcription factor complex
GO	cytoplasm [Amigo]  cytoplasm
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	PKNOX1
TreeFam	PKNOX1
CTD	5316 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PKNOX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	24 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:25:07 2008