Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PKP4-AS1 (PKP4 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) PKP4-AS1
LocusID (NCBI) 100129029
Atlas_Id 79327
Location 2q24.1  [Link to chromosome band 2q24]
Location_base_pair Starts at 158658337 and ends at 158735002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PKP4-AS1   52580
Cards
Entrez_Gene (NCBI)PKP4-AS1  100129029  PKP4 antisense RNA 1
Aliases
GeneCards (Weizmann)PKP4-AS1
Ensembl hg19 (Hinxton)ENSG00000204380 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204380 [Gene_View]  chr2:158658337-158735002 [Contig_View]  PKP4-AS1 [Vega]
ICGC DataPortalENSG00000204380
TCGA cBioPortalPKP4-AS1
AceView (NCBI)PKP4-AS1
Genatlas (Paris)PKP4-AS1
WikiGenes100129029
SOURCE (Princeton)PKP4-AS1
Genetics Home Reference (NIH)PKP4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PKP4-AS1  -     chr2:158658337-158735002 -  2q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PKP4-AS1  -     2q24.1   [Description]    (hg19-Feb_2009)
EnsemblPKP4-AS1 - 2q24.1 [CytoView hg19]  PKP4-AS1 - 2q24.1 [CytoView hg38]
Mapping of homologs : NCBIPKP4-AS1 [Mapview hg19]  PKP4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126351 BC039475
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PKP4-AS1
Cluster EST : UnigeneHs.630724 [ NCBI ]
CGAP (NCI)Hs.630724
Alternative Splicing GalleryENSG00000204380
Gene ExpressionPKP4-AS1 [ NCBI-GEO ]   PKP4-AS1 [ EBI - ARRAY_EXPRESS ]   PKP4-AS1 [ SEEK ]   PKP4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PKP4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129029
GTEX Portal (Tissue expression)PKP4-AS1
Human Protein AtlasENSG00000204380-PKP4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PKP4-AS1
DMDM Disease mutations100129029
Blocks (Seattle)PKP4-AS1
Human Protein Atlas [tissue]ENSG00000204380-PKP4-AS1 [tissue]
IPIIPI00445203   
Protein Interaction databases
FunCoupENSG00000204380
BioGRIDPKP4-AS1
STRING (EMBL)PKP4-AS1
ZODIACPKP4-AS1
Ontologies - Pathways
Huge Navigator PKP4-AS1 [HugePedia]
snp3D : Map Gene to Disease100129029
BioCentury BCIQPKP4-AS1
ClinGenPKP4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129029
Clinical trialPKP4-AS1
Miscellaneous
canSAR (ICR)PKP4-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePKP4-AS1
EVEXPKP4-AS1
GoPubMedPKP4-AS1
iHOPPKP4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:07:19 CET 2017

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