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PLA2G2C (phospholipase A2 group IIC)

Identity

Alias_namesphospholipase A2, group IIC (possible pseudogene)
phospholipase A2, group IIC
Other alias-
HGNC (Hugo) PLA2G2C
LocusID (NCBI) 391013
Atlas_Id 71952
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 20163092 and ends at 20177364 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLA2G2C   9032
Cards
Entrez_Gene (NCBI)PLA2G2C  391013  phospholipase A2 group IIC
Aliases
GeneCards (Weizmann)PLA2G2C
Ensembl hg19 (Hinxton)ENSG00000187980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187980 [Gene_View]  chr1:20163092-20177364 [Contig_View]  PLA2G2C [Vega]
ICGC DataPortalENSG00000187980
TCGA cBioPortalPLA2G2C
AceView (NCBI)PLA2G2C
Genatlas (Paris)PLA2G2C
WikiGenes391013
SOURCE (Princeton)PLA2G2C
Genetics Home Reference (NIH)PLA2G2C
Genomic and cartography
GoldenPath hg38 (UCSC)PLA2G2C  -     chr1:20163092-20177364 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLA2G2C  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblPLA2G2C - 1p36.12 [CytoView hg19]  PLA2G2C - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIPLA2G2C [Mapview hg19]  PLA2G2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW135717
RefSeq transcript (Entrez)NM_001105572 NM_001316722
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLA2G2C
Cluster EST : UnigeneHs.512512 [ NCBI ]
CGAP (NCI)Hs.512512
Alternative Splicing GalleryENSG00000187980
Gene ExpressionPLA2G2C [ NCBI-GEO ]   PLA2G2C [ EBI - ARRAY_EXPRESS ]   PLA2G2C [ SEEK ]   PLA2G2C [ MEM ]
Gene Expression Viewer (FireBrowse)PLA2G2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391013
GTEX Portal (Tissue expression)PLA2G2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R387   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5R387  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5R387
Splice isoforms : SwissVarQ5R387
PhosPhoSitePlusQ5R387
Domaine pattern : Prosite (Expaxy)PA2_ASP (PS00119)   
Domains : Interpro (EBI)PLipase_A2    PLipase_A2_Asp_AS    PLipase_A2_dom   
Domain families : Pfam (Sanger)Phospholip_A2_1 (PF00068)   
Domain families : Pfam (NCBI)pfam00068   
Domain families : Smart (EMBL)PA2c (SM00085)  
Conserved Domain (NCBI)PLA2G2C
DMDM Disease mutations391013
Blocks (Seattle)PLA2G2C
SuperfamilyQ5R387
Human Protein AtlasENSG00000187980
Peptide AtlasQ5R387
IPIIPI00868677   IPI00974023   
Protein Interaction databases
DIP (DOE-UCLA)Q5R387
IntAct (EBI)Q5R387
FunCoupENSG00000187980
BioGRIDPLA2G2C
STRING (EMBL)PLA2G2C
ZODIACPLA2G2C
Ontologies - Pathways
QuickGOQ5R387
Ontology : AmiGOcalcium ion binding  extracellular region  phospholipid metabolic process  lipid catabolic process  arachidonic acid secretion  
Ontology : EGO-EBIcalcium ion binding  extracellular region  phospholipid metabolic process  lipid catabolic process  arachidonic acid secretion  
Pathways : KEGGGlycerophospholipid metabolism    Ether lipid metabolism    Arachidonic acid metabolism    Linoleic acid metabolism    alpha-Linolenic acid metabolism    Ras signaling pathway    Vascular smooth muscle contraction    Pancreatic secretion    Fat digestion and absorption   
NDEx NetworkPLA2G2C
Atlas of Cancer Signalling NetworkPLA2G2C
Wikipedia pathwaysPLA2G2C
Orthology - Evolution
OrthoDB391013
GeneTree (enSembl)ENSG00000187980
Phylogenetic Trees/Animal Genes : TreeFamPLA2G2C
HOVERGENQ5R387
HOGENOMQ5R387
Homologs : HomoloGenePLA2G2C
Homology/Alignments : Family Browser (UCSC)PLA2G2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLA2G2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLA2G2C
dbVarPLA2G2C
ClinVarPLA2G2C
1000_GenomesPLA2G2C 
Exome Variant ServerPLA2G2C
ExAC (Exome Aggregation Consortium)PLA2G2C (select the gene name)
Genetic variants : HAPMAP391013
Genomic Variants (DGV)PLA2G2C [DGVbeta]
DECIPHERPLA2G2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLA2G2C 
Mutations
ICGC Data PortalPLA2G2C 
TCGA Data PortalPLA2G2C 
Broad Tumor PortalPLA2G2C
OASIS PortalPLA2G2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLA2G2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLA2G2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLA2G2C
DgiDB (Drug Gene Interaction Database)PLA2G2C
DoCM (Curated mutations)PLA2G2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLA2G2C (select a term)
intoGenPLA2G2C
Cancer3DPLA2G2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLA2G2C
Genetic Testing Registry PLA2G2C
NextProtQ5R387 [Medical]
TSGene391013
GENETestsPLA2G2C
Target ValidationPLA2G2C
Huge Navigator PLA2G2C [HugePedia]
snp3D : Map Gene to Disease391013
BioCentury BCIQPLA2G2C
ClinGenPLA2G2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391013
Chemical/Pharm GKB GenePA33362
Clinical trialPLA2G2C
Miscellaneous
canSAR (ICR)PLA2G2C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLA2G2C
EVEXPLA2G2C
GoPubMedPLA2G2C
iHOPPLA2G2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:30 CEST 2017

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