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PLA2G2F (phospholipase A2 group IIF)

Identity

Alias_namesphospholipase A2
Other alias-
HGNC (Hugo) PLA2G2F
LocusID (NCBI) 64600
Atlas_Id 56219
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 20465823 and ends at 20476879 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLA2G2F   30040
Cards
Entrez_Gene (NCBI)PLA2G2F  64600  phospholipase A2 group IIF
Aliases
GeneCards (Weizmann)PLA2G2F
Ensembl hg19 (Hinxton)ENSG00000158786 [Gene_View]  chr1:20465823-20476879 [Contig_View]  PLA2G2F [Vega]
Ensembl hg38 (Hinxton)ENSG00000158786 [Gene_View]  chr1:20465823-20476879 [Contig_View]  PLA2G2F [Vega]
ICGC DataPortalENSG00000158786
TCGA cBioPortalPLA2G2F
AceView (NCBI)PLA2G2F
Genatlas (Paris)PLA2G2F
WikiGenes64600
SOURCE (Princeton)PLA2G2F
Genetics Home Reference (NIH)PLA2G2F
Genomic and cartography
GoldenPath hg19 (UCSC)PLA2G2F  -     chr1:20465823-20476879 +  1p36.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLA2G2F  -     1p36.12   [Description]    (hg38-Dec_2013)
EnsemblPLA2G2F - 1p36.12 [CytoView hg19]  PLA2G2F - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIPLA2G2F [Mapview hg19]  PLA2G2F [Mapview hg38]
OMIM616793   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_022819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLA2G2F
Cluster EST : UnigeneHs.302034 [ NCBI ]
CGAP (NCI)Hs.302034
Alternative Splicing GalleryENSG00000158786
Gene ExpressionPLA2G2F [ NCBI-GEO ]   PLA2G2F [ EBI - ARRAY_EXPRESS ]   PLA2G2F [ SEEK ]   PLA2G2F [ MEM ]
Gene Expression Viewer (FireBrowse)PLA2G2F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64600
GTEX Portal (Tissue expression)PLA2G2F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZM2
Splice isoforms : SwissVarQ9BZM2
Catalytic activity : Enzyme3.1.1.4 [ Enzyme-Expasy ]   3.1.1.43.1.1.4 [ IntEnz-EBI ]   3.1.1.4 [ BRENDA ]   3.1.1.4 [ KEGG ]   
PhosPhoSitePlusQ9BZM2
Domaine pattern : Prosite (Expaxy)PA2_HIS (PS00118)   
Domains : Interpro (EBI)PLipase_A2    PLipase_A2_dom    PLipase_A2_His_AS   
Domain families : Pfam (Sanger)Phospholip_A2_1 (PF00068)   
Domain families : Pfam (NCBI)pfam00068   
Domain families : Smart (EMBL)PA2c (SM00085)  
Conserved Domain (NCBI)PLA2G2F
DMDM Disease mutations64600
Blocks (Seattle)PLA2G2F
SuperfamilyQ9BZM2
Human Protein AtlasENSG00000158786
Peptide AtlasQ9BZM2
HPRD07499
IPIIPI00930096   IPI00010184   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZM2
IntAct (EBI)Q9BZM2
FunCoupENSG00000158786
BioGRIDPLA2G2F
STRING (EMBL)PLA2G2F
ZODIACPLA2G2F
Ontologies - Pathways
QuickGOQ9BZM2
Ontology : AmiGOphospholipase A2 activity  phospholipase A2 activity  calcium ion binding  extracellular region  extracellular region  cytosol  phosphatidic acid biosynthetic process  biological_process  lipid catabolic process  phosphatidylglycerol acyl-chain remodeling  phosphatidylinositol acyl-chain remodeling  phosphatidylserine acyl-chain remodeling  phosphatidylcholine acyl-chain remodeling  phosphatidylethanolamine acyl-chain remodeling  negative regulation of T cell proliferation  arachidonic acid secretion  
Ontology : EGO-EBIphospholipase A2 activity  phospholipase A2 activity  calcium ion binding  extracellular region  extracellular region  cytosol  phosphatidic acid biosynthetic process  biological_process  lipid catabolic process  phosphatidylglycerol acyl-chain remodeling  phosphatidylinositol acyl-chain remodeling  phosphatidylserine acyl-chain remodeling  phosphatidylcholine acyl-chain remodeling  phosphatidylethanolamine acyl-chain remodeling  negative regulation of T cell proliferation  arachidonic acid secretion  
Pathways : KEGGGlycerophospholipid metabolism    Ether lipid metabolism    Arachidonic acid metabolism    Linoleic acid metabolism    alpha-Linolenic acid metabolism    Ras signaling pathway    Vascular smooth muscle contraction    Pancreatic secretion    Fat digestion and absorption   
NDEx NetworkPLA2G2F
Atlas of Cancer Signalling NetworkPLA2G2F
Wikipedia pathwaysPLA2G2F
Orthology - Evolution
OrthoDB64600
GeneTree (enSembl)ENSG00000158786
Phylogenetic Trees/Animal Genes : TreeFamPLA2G2F
HOVERGENQ9BZM2
HOGENOMQ9BZM2
Homologs : HomoloGenePLA2G2F
Homology/Alignments : Family Browser (UCSC)PLA2G2F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLA2G2F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLA2G2F
dbVarPLA2G2F
ClinVarPLA2G2F
1000_GenomesPLA2G2F 
Exome Variant ServerPLA2G2F
ExAC (Exome Aggregation Consortium)PLA2G2F (select the gene name)
Genetic variants : HAPMAP64600
Genomic Variants (DGV)PLA2G2F [DGVbeta]
DECIPHER (Syndromes)1:20465823-20476879  ENSG00000158786
CONAN: Copy Number AnalysisPLA2G2F 
Mutations
ICGC Data PortalPLA2G2F 
TCGA Data PortalPLA2G2F 
Broad Tumor PortalPLA2G2F
OASIS PortalPLA2G2F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLA2G2F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLA2G2F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLA2G2F
DgiDB (Drug Gene Interaction Database)PLA2G2F
DoCM (Curated mutations)PLA2G2F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLA2G2F (select a term)
intoGenPLA2G2F
Cancer3DPLA2G2F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616793   
Orphanet
MedgenPLA2G2F
Genetic Testing Registry PLA2G2F
NextProtQ9BZM2 [Medical]
TSGene64600
GENETestsPLA2G2F
Huge Navigator PLA2G2F [HugePedia]
snp3D : Map Gene to Disease64600
BioCentury BCIQPLA2G2F
ClinGenPLA2G2F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64600
Chemical/Pharm GKB GenePA134931043
Clinical trialPLA2G2F
Miscellaneous
canSAR (ICR)PLA2G2F (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLA2G2F
EVEXPLA2G2F
GoPubMedPLA2G2F
iHOPPLA2G2F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:14:34 CEST 2017

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