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PLAC1 (placenta enriched 1)

Identity

Alias (NCBI)CT92
OOSP2B
OOSP2L
HGNC (Hugo) PLAC1
HGNC Alias symbCT92
OOSP2L
OOSP2B
HGNC Alias namecancer/testis antigen 92
HGNC Previous nameplacenta specific 1
LocusID (NCBI) 10761
Atlas_Id 49881
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134565841 and ends at 134658471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLAC1 (Xq26.3) / DSCAM (21q22.2)PLAC1 (Xq26.3) / PAX5 (9p13.2)PLAC1 Xq26.3 / DSCAM 21q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PLAC1   9044
Cards
Entrez_Gene (NCBI)PLAC1    placenta enriched 1
AliasesCT92; OOSP2B; OOSP2L
GeneCards (Weizmann)PLAC1
Ensembl hg19 (Hinxton)ENSG00000170965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170965 [Gene_View]  ENSG00000170965 [Sequence]  chrX:134565841-134658471 [Contig_View]  PLAC1 [Vega]
ICGC DataPortalENSG00000170965
TCGA cBioPortalPLAC1
AceView (NCBI)PLAC1
Genatlas (Paris)PLAC1
SOURCE (Princeton)PLAC1
Genetics Home Reference (NIH)PLAC1
Genomic and cartography
GoldenPath hg38 (UCSC)PLAC1  -     chrX:134565841-134658471 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLAC1  -     Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPathPLAC1 - Xq26.3 [CytoView hg19]  PLAC1 - Xq26.3 [CytoView hg38]
ImmunoBaseENSG00000170965
Genome Data Viewer NCBIPLAC1 [Mapview hg19]  
OMIM300296   
Gene and transcription
Genbank (Entrez)AF234654 AK075086 BC022335 BC066327 BG436529
RefSeq transcript (Entrez)NM_001316887 NM_001316888 NM_001316889 NM_021796
Consensus coding sequences : CCDS (NCBI)PLAC1
Gene ExpressionPLAC1 [ NCBI-GEO ]   PLAC1 [ EBI - ARRAY_EXPRESS ]   PLAC1 [ SEEK ]   PLAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLAC1 [ Firebrowse - Broad ]
GenevisibleExpression of PLAC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10761
GTEX Portal (Tissue expression)PLAC1
Human Protein AtlasENSG00000170965-PLAC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBJ0
PhosPhoSitePlusQ9HBJ0
Domains : Interpro (EBI)PLAC1    PLAC1_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLAC1
SuperfamilyQ9HBJ0
AlphaFold pdb e-kbQ9HBJ0   
Human Protein Atlas [tissue]ENSG00000170965-PLAC1 [tissue]
HPRD02245
Protein Interaction databases
DIP (DOE-UCLA)Q9HBJ0
IntAct (EBI)Q9HBJ0
BioGRIDPLAC1
STRING (EMBL)PLAC1
ZODIACPLAC1
Ontologies - Pathways
QuickGOQ9HBJ0
Ontology : AmiGOplacenta development  molecular_function  cellular_component  extracellular region  
Ontology : EGO-EBIplacenta development  molecular_function  cellular_component  extracellular region  
NDEx NetworkPLAC1
Atlas of Cancer Signalling NetworkPLAC1
Wikipedia pathwaysPLAC1
Orthology - Evolution
OrthoDB10761
GeneTree (enSembl)ENSG00000170965
Phylogenetic Trees/Animal Genes : TreeFamPLAC1
Homologs : HomoloGenePLAC1
Homology/Alignments : Family Browser (UCSC)PLAC1
Gene fusions - Rearrangements
Fusion : MitelmanPLAC1/DSCAM [Xq26.3/21q22.2]  
Fusion : QuiverPLAC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLAC1
dbVarPLAC1
ClinVarPLAC1
MonarchPLAC1
1000_GenomesPLAC1 
Exome Variant ServerPLAC1
GNOMAD BrowserENSG00000170965
Varsome BrowserPLAC1
ACMGPLAC1 variants
VarityQ9HBJ0
Genomic Variants (DGV)PLAC1 [DGVbeta]
DECIPHERPLAC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLAC1 
Mutations
ICGC Data PortalPLAC1 
TCGA Data PortalPLAC1 
Broad Tumor PortalPLAC1
OASIS PortalPLAC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLAC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPLAC1
Mutations and Diseases : HGMDPLAC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPLAC1
DgiDB (Drug Gene Interaction Database)PLAC1
DoCM (Curated mutations)PLAC1
CIViC (Clinical Interpretations of Variants in Cancer)PLAC1
Cancer3DPLAC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300296   
Orphanet
DisGeNETPLAC1
MedgenPLAC1
Genetic Testing Registry PLAC1
NextProtQ9HBJ0 [Medical]
GENETestsPLAC1
Target ValidationPLAC1
Huge Navigator PLAC1 [HugePedia]
ClinGenPLAC1
Clinical trials, drugs, therapy
MyCancerGenomePLAC1
Protein Interactions : CTDPLAC1
Pharm GKB GenePA33371
PharosQ9HBJ0
Clinical trialPLAC1
Miscellaneous
canSAR (ICR)PLAC1
HarmonizomePLAC1
DataMed IndexPLAC1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPLAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:25:35 CEST 2021

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