Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PLAC1 (placenta specific 1)

Identity

Alias_symbol (synonym)CT92
OOSP2L
Other alias
HGNC (Hugo) PLAC1
LocusID (NCBI) 10761
Atlas_Id 49881
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 133699873 and ends at 133898352 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PLAC1 (Xq26.3) / DSCAM (21q22.2)PLAC1 (Xq26.3) / PAX5 (9p13.2)PLAC1 Xq26.3 / DSCAM 21q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLAC1   9044
Cards
Entrez_Gene (NCBI)PLAC1  10761  placenta specific 1
AliasesCT92; OOSP2L
GeneCards (Weizmann)PLAC1
Ensembl hg19 (Hinxton)ENSG00000170965 [Gene_View]  chrX:133699873-133898352 [Contig_View]  PLAC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170965 [Gene_View]  chrX:133699873-133898352 [Contig_View]  PLAC1 [Vega]
ICGC DataPortalENSG00000170965
TCGA cBioPortalPLAC1
AceView (NCBI)PLAC1
Genatlas (Paris)PLAC1
WikiGenes10761
SOURCE (Princeton)PLAC1
Genetics Home Reference (NIH)PLAC1
Genomic and cartography
GoldenPath hg19 (UCSC)PLAC1  -     chrX:133699873-133898352 -  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLAC1  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblPLAC1 - Xq26.3 [CytoView hg19]  PLAC1 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIPLAC1 [Mapview hg19]  PLAC1 [Mapview hg38]
OMIM300296   
Gene and transcription
Genbank (Entrez)AF234654 AK075086 BC022335 BC066327 BG436529
RefSeq transcript (Entrez)NM_001316887 NM_001316888 NM_001316889 NM_021796
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)PLAC1
Cluster EST : UnigeneHs.496811 [ NCBI ]
CGAP (NCI)Hs.496811
Alternative Splicing GalleryENSG00000170965
Gene ExpressionPLAC1 [ NCBI-GEO ]   PLAC1 [ EBI - ARRAY_EXPRESS ]   PLAC1 [ SEEK ]   PLAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLAC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10761
GTEX Portal (Tissue expression)PLAC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBJ0
Splice isoforms : SwissVarQ9HBJ0
PhosPhoSitePlusQ9HBJ0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLAC1
DMDM Disease mutations10761
Blocks (Seattle)PLAC1
SuperfamilyQ9HBJ0
Human Protein AtlasENSG00000170965
Peptide AtlasQ9HBJ0
HPRD02245
IPIIPI00029136   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBJ0
IntAct (EBI)Q9HBJ0
FunCoupENSG00000170965
BioGRIDPLAC1
STRING (EMBL)PLAC1
ZODIACPLAC1
Ontologies - Pathways
QuickGOQ9HBJ0
Ontology : AmiGOplacenta development  molecular_function  cellular_component  extracellular region  spongiotrophoblast layer developmental growth  
Ontology : EGO-EBIplacenta development  molecular_function  cellular_component  extracellular region  spongiotrophoblast layer developmental growth  
NDEx NetworkPLAC1
Atlas of Cancer Signalling NetworkPLAC1
Wikipedia pathwaysPLAC1
Orthology - Evolution
OrthoDB10761
GeneTree (enSembl)ENSG00000170965
Phylogenetic Trees/Animal Genes : TreeFamPLAC1
HOVERGENQ9HBJ0
HOGENOMQ9HBJ0
Homologs : HomoloGenePLAC1
Homology/Alignments : Family Browser (UCSC)PLAC1
Gene fusions - Rearrangements
Fusion : MitelmanPLAC1/DSCAM [Xq26.3/21q22.2]  
Fusion: TCGAPLAC1 Xq26.3 DSCAM 21q22.2 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLAC1
dbVarPLAC1
ClinVarPLAC1
1000_GenomesPLAC1 
Exome Variant ServerPLAC1
ExAC (Exome Aggregation Consortium)PLAC1 (select the gene name)
Genetic variants : HAPMAP10761
Genomic Variants (DGV)PLAC1 [DGVbeta]
DECIPHER (Syndromes)X:133699873-133898352  ENSG00000170965
CONAN: Copy Number AnalysisPLAC1 
Mutations
ICGC Data PortalPLAC1 
TCGA Data PortalPLAC1 
Broad Tumor PortalPLAC1
OASIS PortalPLAC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLAC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLAC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLAC1
DgiDB (Drug Gene Interaction Database)PLAC1
DoCM (Curated mutations)PLAC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLAC1 (select a term)
intoGenPLAC1
Cancer3DPLAC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300296   
Orphanet
MedgenPLAC1
Genetic Testing Registry PLAC1
NextProtQ9HBJ0 [Medical]
TSGene10761
GENETestsPLAC1
Huge Navigator PLAC1 [HugePedia]
snp3D : Map Gene to Disease10761
BioCentury BCIQPLAC1
ClinGenPLAC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10761
Chemical/Pharm GKB GenePA33371
Clinical trialPLAC1
Miscellaneous
canSAR (ICR)PLAC1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLAC1
EVEXPLAC1
GoPubMedPLAC1
iHOPPLAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:21:40 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.