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PLAC4 (placenta specific 4)

Identity

Alias_namesC21orf115
chromosome 21 open reading frame 115
Alias_symbol (synonym)MGC126664
MGC126666
PRED78
Other alias
HGNC (Hugo) PLAC4
LocusID (NCBI) 191585
Atlas_Id 71958
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 41175231 and ends at 41185239 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLAC4   14616
Cards
Entrez_Gene (NCBI)PLAC4  191585  placenta specific 4
AliasesC21orf115; PRED78
GeneCards (Weizmann)PLAC4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:41175231-41185239 [Contig_View]  PLAC4 [Vega]
TCGA cBioPortalPLAC4
AceView (NCBI)PLAC4
Genatlas (Paris)PLAC4
WikiGenes191585
SOURCE (Princeton)PLAC4
Genetics Home Reference (NIH)PLAC4
Genomic and cartography
GoldenPath hg38 (UCSC)PLAC4  -     chr21:41175231-41185239 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLAC4  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblPLAC4 - 21q22.2 [CytoView hg19]  PLAC4 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIPLAC4 [Mapview hg19]  PLAC4 [Mapview hg38]
OMIM613770   
Gene and transcription
Genbank (Entrez)AF269287 AK027868 AK092431 BC093685 BC101615
RefSeq transcript (Entrez)NM_182832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLAC4
Cluster EST : UnigeneHs.472492 [ NCBI ]
CGAP (NCI)Hs.472492
Gene ExpressionPLAC4 [ NCBI-GEO ]   PLAC4 [ EBI - ARRAY_EXPRESS ]   PLAC4 [ SEEK ]   PLAC4 [ MEM ]
Gene Expression Viewer (FireBrowse)PLAC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)191585
GTEX Portal (Tissue expression)PLAC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WY50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WY50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WY50
Splice isoforms : SwissVarQ8WY50
PhosPhoSitePlusQ8WY50
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLAC4
DMDM Disease mutations191585
Blocks (Seattle)PLAC4
SuperfamilyQ8WY50
Peptide AtlasQ8WY50
IPIIPI00383172   IPI00168041   
Protein Interaction databases
DIP (DOE-UCLA)Q8WY50
IntAct (EBI)Q8WY50
BioGRIDPLAC4
STRING (EMBL)PLAC4
ZODIACPLAC4
Ontologies - Pathways
QuickGOQ8WY50
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPLAC4
Atlas of Cancer Signalling NetworkPLAC4
Wikipedia pathwaysPLAC4
Orthology - Evolution
OrthoDB191585
Phylogenetic Trees/Animal Genes : TreeFamPLAC4
HOVERGENQ8WY50
HOGENOMQ8WY50
Homologs : HomoloGenePLAC4
Homology/Alignments : Family Browser (UCSC)PLAC4
Gene fusions - Rearrangements
Tumor Fusion PortalPLAC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLAC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLAC4
dbVarPLAC4
ClinVarPLAC4
1000_GenomesPLAC4 
Exome Variant ServerPLAC4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP191585
Genomic Variants (DGV)PLAC4 [DGVbeta]
DECIPHERPLAC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLAC4 
Mutations
ICGC Data PortalPLAC4 
TCGA Data PortalPLAC4 
Broad Tumor PortalPLAC4
OASIS PortalPLAC4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLAC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLAC4
DgiDB (Drug Gene Interaction Database)PLAC4
DoCM (Curated mutations)PLAC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLAC4 (select a term)
intoGenPLAC4
Cancer3DPLAC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613770   
Orphanet
DisGeNETPLAC4
MedgenPLAC4
Genetic Testing Registry PLAC4
NextProtQ8WY50 [Medical]
TSGene191585
GENETestsPLAC4
Target ValidationPLAC4
Huge Navigator PLAC4 [HugePedia]
snp3D : Map Gene to Disease191585
BioCentury BCIQPLAC4
ClinGenPLAC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD191585
Chemical/Pharm GKB GenePA33374
Clinical trialPLAC4
Miscellaneous
canSAR (ICR)PLAC4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLAC4
EVEXPLAC4
GoPubMedPLAC4
iHOPPLAC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:11 CET 2017

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