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PLAC8L1 (PLAC8 like 1)

Identity

Other alias-
HGNC (Hugo) PLAC8L1
LocusID (NCBI) 153770
Atlas_Id 71959
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 146084313 and ends at 146104383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPB41L4A (5q22.1) / PLAC8L1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLAC8L1   31746
Cards
Entrez_Gene (NCBI)PLAC8L1  153770  PLAC8 like 1
Aliases
GeneCards (Weizmann)PLAC8L1
Ensembl hg19 (Hinxton)ENSG00000173261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173261 [Gene_View]  chr5:146084313-146104383 [Contig_View]  PLAC8L1 [Vega]
ICGC DataPortalENSG00000173261
TCGA cBioPortalPLAC8L1
AceView (NCBI)PLAC8L1
Genatlas (Paris)PLAC8L1
WikiGenes153770
SOURCE (Princeton)PLAC8L1
Genetics Home Reference (NIH)PLAC8L1
Genomic and cartography
GoldenPath hg38 (UCSC)PLAC8L1  -     chr5:146084313-146104383 -  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLAC8L1  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblPLAC8L1 - 5q32 [CytoView hg19]  PLAC8L1 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIPLAC8L1 [Mapview hg19]  PLAC8L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC130586 BC130588 BC144387 BC144388 BC144389
RefSeq transcript (Entrez)NM_001029869
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLAC8L1
Cluster EST : UnigeneHs.162369 [ NCBI ]
CGAP (NCI)Hs.162369
Alternative Splicing GalleryENSG00000173261
Gene ExpressionPLAC8L1 [ NCBI-GEO ]   PLAC8L1 [ EBI - ARRAY_EXPRESS ]   PLAC8L1 [ SEEK ]   PLAC8L1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLAC8L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153770
GTEX Portal (Tissue expression)PLAC8L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L4L8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L4L8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L4L8
Splice isoforms : SwissVarA1L4L8
PhosPhoSitePlusA1L4L8
Domains : Interpro (EBI)PLAC_motif_containing   
Domain families : Pfam (Sanger)PLAC8 (PF04749)   
Domain families : Pfam (NCBI)pfam04749   
Conserved Domain (NCBI)PLAC8L1
DMDM Disease mutations153770
Blocks (Seattle)PLAC8L1
SuperfamilyA1L4L8
Human Protein AtlasENSG00000173261
Peptide AtlasA1L4L8
HPRD18737
IPIIPI00076612   IPI00967225   
Protein Interaction databases
DIP (DOE-UCLA)A1L4L8
IntAct (EBI)A1L4L8
FunCoupENSG00000173261
BioGRIDPLAC8L1
STRING (EMBL)PLAC8L1
ZODIACPLAC8L1
Ontologies - Pathways
QuickGOA1L4L8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPLAC8L1
Atlas of Cancer Signalling NetworkPLAC8L1
Wikipedia pathwaysPLAC8L1
Orthology - Evolution
OrthoDB153770
GeneTree (enSembl)ENSG00000173261
Phylogenetic Trees/Animal Genes : TreeFamPLAC8L1
HOVERGENA1L4L8
HOGENOMA1L4L8
Homologs : HomoloGenePLAC8L1
Homology/Alignments : Family Browser (UCSC)PLAC8L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLAC8L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLAC8L1
dbVarPLAC8L1
ClinVarPLAC8L1
1000_GenomesPLAC8L1 
Exome Variant ServerPLAC8L1
ExAC (Exome Aggregation Consortium)PLAC8L1 (select the gene name)
Genetic variants : HAPMAP153770
Genomic Variants (DGV)PLAC8L1 [DGVbeta]
DECIPHERPLAC8L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLAC8L1 
Mutations
ICGC Data PortalPLAC8L1 
TCGA Data PortalPLAC8L1 
Broad Tumor PortalPLAC8L1
OASIS PortalPLAC8L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLAC8L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLAC8L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLAC8L1
DgiDB (Drug Gene Interaction Database)PLAC8L1
DoCM (Curated mutations)PLAC8L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLAC8L1 (select a term)
intoGenPLAC8L1
Cancer3DPLAC8L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLAC8L1
Genetic Testing Registry PLAC8L1
NextProtA1L4L8 [Medical]
TSGene153770
GENETestsPLAC8L1
Target ValidationPLAC8L1
Huge Navigator PLAC8L1 [HugePedia]
snp3D : Map Gene to Disease153770
BioCentury BCIQPLAC8L1
ClinGenPLAC8L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153770
Chemical/Pharm GKB GenePA134890176
Clinical trialPLAC8L1
Miscellaneous
canSAR (ICR)PLAC8L1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLAC8L1
EVEXPLAC8L1
GoPubMedPLAC8L1
iHOPPLAC8L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:31 CEST 2017

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