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PLAC9 (placenta-specific 9)

Identity

Other alias-
HGNC (Hugo) PLAC9
LocusID (NCBI) 219348
Atlas_Id 71960
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 81892258 and ends at 81904784 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LGALS12 (11q12.3) / PLAC9 (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLAC9   19255
Cards
Entrez_Gene (NCBI)PLAC9  219348  placenta-specific 9
Aliases
GeneCards (Weizmann)PLAC9
Ensembl hg19 (Hinxton) [Gene_View]  chr10:81892258-81904784 [Contig_View]  PLAC9 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:81892258-81904784 [Contig_View]  PLAC9 [Vega]
TCGA cBioPortalPLAC9
AceView (NCBI)PLAC9
Genatlas (Paris)PLAC9
WikiGenes219348
SOURCE (Princeton)PLAC9
Genetics Home Reference (NIH)PLAC9
Genomic and cartography
GoldenPath hg19 (UCSC)PLAC9  -     chr10:81892258-81904784 +  10q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLAC9  -     10q22.3   [Description]    (hg38-Dec_2013)
EnsemblPLAC9 - 10q22.3 [CytoView hg19]  PLAC9 - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBIPLAC9 [Mapview hg19]  PLAC9 [Mapview hg38]
OMIM612857   
Gene and transcription
Genbank (Entrez)BC066348 BC090922 BC117332 BC117334 EU446996
RefSeq transcript (Entrez)NM_001012973
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PLAC9
Cluster EST : UnigeneHs.204947 [ NCBI ]
CGAP (NCI)Hs.204947
Gene ExpressionPLAC9 [ NCBI-GEO ]   PLAC9 [ EBI - ARRAY_EXPRESS ]   PLAC9 [ SEEK ]   PLAC9 [ MEM ]
Gene Expression Viewer (FireBrowse)PLAC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219348
GTEX Portal (Tissue expression)PLAC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTB6
Splice isoforms : SwissVarQ5JTB6
PhosPhoSitePlusQ5JTB6
Domains : Interpro (EBI)PLAC9   
Domain families : Pfam (Sanger)PLAC9 (PF15205)   
Domain families : Pfam (NCBI)pfam15205   
Conserved Domain (NCBI)PLAC9
DMDM Disease mutations219348
Blocks (Seattle)PLAC9
SuperfamilyQ5JTB6
Peptide AtlasQ5JTB6
HPRD18491
IPIIPI00150349   IPI00646931   IPI00553141   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTB6
IntAct (EBI)Q5JTB6
BioGRIDPLAC9
STRING (EMBL)PLAC9
ZODIACPLAC9
Ontologies - Pathways
QuickGOQ5JTB6
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkPLAC9
Atlas of Cancer Signalling NetworkPLAC9
Wikipedia pathwaysPLAC9
Orthology - Evolution
OrthoDB219348
Phylogenetic Trees/Animal Genes : TreeFamPLAC9
HOVERGENQ5JTB6
HOGENOMQ5JTB6
Homologs : HomoloGenePLAC9
Homology/Alignments : Family Browser (UCSC)PLAC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLAC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLAC9
dbVarPLAC9
ClinVarPLAC9
1000_GenomesPLAC9 
Exome Variant ServerPLAC9
ExAC (Exome Aggregation Consortium)PLAC9 (select the gene name)
Genetic variants : HAPMAP219348
Genomic Variants (DGV)PLAC9 [DGVbeta]
DECIPHER (Syndromes)10:81892258-81904784  
CONAN: Copy Number AnalysisPLAC9 
Mutations
ICGC Data PortalPLAC9 
TCGA Data PortalPLAC9 
Broad Tumor PortalPLAC9
OASIS PortalPLAC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLAC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLAC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLAC9
DgiDB (Drug Gene Interaction Database)PLAC9
DoCM (Curated mutations)PLAC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLAC9 (select a term)
intoGenPLAC9
Cancer3DPLAC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612857   
Orphanet
MedgenPLAC9
Genetic Testing Registry PLAC9
NextProtQ5JTB6 [Medical]
TSGene219348
GENETestsPLAC9
Huge Navigator PLAC9 [HugePedia]
snp3D : Map Gene to Disease219348
BioCentury BCIQPLAC9
ClinGenPLAC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219348
Chemical/Pharm GKB GenePA134941839
Clinical trialPLAC9
Miscellaneous
canSAR (ICR)PLAC9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLAC9
EVEXPLAC9
GoPubMedPLAC9
iHOPPLAC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:49 CET 2017

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