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PLBD1 (phospholipase B domain containing 1)

Identity

Alias_symbol (synonym)FLJ22662
Other alias-
HGNC (Hugo) PLBD1
LocusID (NCBI) 79887
Atlas_Id 71962
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 14503663 and ends at 14567857 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLBD1 (12p13.1) / CREBL2 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLBD1   26215
Cards
Entrez_Gene (NCBI)PLBD1  79887  phospholipase B domain containing 1
Aliases
GeneCards (Weizmann)PLBD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:14503663-14567857 [Contig_View]  PLBD1 [Vega]
TCGA cBioPortalPLBD1
AceView (NCBI)PLBD1
Genatlas (Paris)PLBD1
WikiGenes79887
SOURCE (Princeton)PLBD1
Genetics Home Reference (NIH)PLBD1
Genomic and cartography
GoldenPath hg38 (UCSC)PLBD1  -     chr12:14503663-14567857 -  12p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLBD1  -     12p13.1   [Description]    (hg19-Feb_2009)
EnsemblPLBD1 - 12p13.1 [CytoView hg19]  PLBD1 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIPLBD1 [Mapview hg19]  PLBD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI370813 AK026315 AK225458 AK290914 BC000909
RefSeq transcript (Entrez)NM_024829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLBD1
Cluster EST : UnigeneHs.131933 [ NCBI ]
CGAP (NCI)Hs.131933
Gene ExpressionPLBD1 [ NCBI-GEO ]   PLBD1 [ EBI - ARRAY_EXPRESS ]   PLBD1 [ SEEK ]   PLBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLBD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79887
GTEX Portal (Tissue expression)PLBD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4A8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4A8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4A8
Splice isoforms : SwissVarQ6P4A8
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ6P4A8
Domains : Interpro (EBI)PLipase_B-like   
Domain families : Pfam (Sanger)Phospholip_B (PF04916)   
Domain families : Pfam (NCBI)pfam04916   
Conserved Domain (NCBI)PLBD1
DMDM Disease mutations79887
Blocks (Seattle)PLBD1
SuperfamilyQ6P4A8
Peptide AtlasQ6P4A8
HPRD08660
IPIIPI00016255   IPI01013092   IPI01012609   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4A8
IntAct (EBI)Q6P4A8
BioGRIDPLBD1
STRING (EMBL)PLBD1
ZODIACPLBD1
Ontologies - Pathways
QuickGOQ6P4A8
Ontology : AmiGOlysophospholipase activity  phospholipase A2 activity  extracellular space  lysosome  cytosol  phospholipid metabolic process  lipid catabolic process  phosphatidylinositol acyl-chain remodeling  phosphatidylcholine acyl-chain remodeling  phosphatidylethanolamine acyl-chain remodeling  
Ontology : EGO-EBIlysophospholipase activity  phospholipase A2 activity  extracellular space  lysosome  cytosol  phospholipid metabolic process  lipid catabolic process  phosphatidylinositol acyl-chain remodeling  phosphatidylcholine acyl-chain remodeling  phosphatidylethanolamine acyl-chain remodeling  
NDEx NetworkPLBD1
Atlas of Cancer Signalling NetworkPLBD1
Wikipedia pathwaysPLBD1
Orthology - Evolution
OrthoDB79887
Phylogenetic Trees/Animal Genes : TreeFamPLBD1
HOVERGENQ6P4A8
HOGENOMQ6P4A8
Homologs : HomoloGenePLBD1
Homology/Alignments : Family Browser (UCSC)PLBD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLBD1
dbVarPLBD1
ClinVarPLBD1
1000_GenomesPLBD1 
Exome Variant ServerPLBD1
ExAC (Exome Aggregation Consortium)PLBD1 (select the gene name)
Genetic variants : HAPMAP79887
Genomic Variants (DGV)PLBD1 [DGVbeta]
DECIPHERPLBD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLBD1 
Mutations
ICGC Data PortalPLBD1 
TCGA Data PortalPLBD1 
Broad Tumor PortalPLBD1
OASIS PortalPLBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLBD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLBD1
DgiDB (Drug Gene Interaction Database)PLBD1
DoCM (Curated mutations)PLBD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLBD1 (select a term)
intoGenPLBD1
Cancer3DPLBD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLBD1
Genetic Testing Registry PLBD1
NextProtQ6P4A8 [Medical]
TSGene79887
GENETestsPLBD1
Target ValidationPLBD1
Huge Navigator PLBD1 [HugePedia]
snp3D : Map Gene to Disease79887
BioCentury BCIQPLBD1
ClinGenPLBD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79887
Chemical/Pharm GKB GenePA164724597
Clinical trialPLBD1
Miscellaneous
canSAR (ICR)PLBD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLBD1
EVEXPLBD1
GoPubMedPLBD1
iHOPPLBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:41 CEST 2017

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