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PLBD2 (phospholipase B domain containing 2)

Identity

Alias_symbol (synonym)p76
Other aliasP76
HGNC (Hugo) PLBD2
LocusID (NCBI) 196463
Atlas_Id 71964
Location 12q24.13  [Link to chromosome band 12q24]
Location_base_pair Starts at 113358566 and ends at 113389653 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLBD2 (12q24.13) / RAB11FIP4 (17q11.2)ZDHHC15 (Xq13.3) / PLBD2 (12q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLBD2   27283
Cards
Entrez_Gene (NCBI)PLBD2  196463  phospholipase B domain containing 2
AliasesP76
GeneCards (Weizmann)PLBD2
Ensembl hg19 (Hinxton)ENSG00000151176 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151176 [Gene_View]  chr12:113358566-113389653 [Contig_View]  PLBD2 [Vega]
ICGC DataPortalENSG00000151176
TCGA cBioPortalPLBD2
AceView (NCBI)PLBD2
Genatlas (Paris)PLBD2
WikiGenes196463
SOURCE (Princeton)PLBD2
Genetics Home Reference (NIH)PLBD2
Genomic and cartography
GoldenPath hg38 (UCSC)PLBD2  -     chr12:113358566-113389653 +  12q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLBD2  -     12q24.13   [Description]    (hg19-Feb_2009)
EnsemblPLBD2 - 12q24.13 [CytoView hg19]  PLBD2 - 12q24.13 [CytoView hg38]
Mapping of homologs : NCBIPLBD2 [Mapview hg19]  PLBD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030618 CN412955
RefSeq transcript (Entrez)NM_001159727 NM_173542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLBD2
Cluster EST : UnigeneHs.115896 [ NCBI ]
CGAP (NCI)Hs.115896
Alternative Splicing GalleryENSG00000151176
Gene ExpressionPLBD2 [ NCBI-GEO ]   PLBD2 [ EBI - ARRAY_EXPRESS ]   PLBD2 [ SEEK ]   PLBD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PLBD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196463
GTEX Portal (Tissue expression)PLBD2
Human Protein AtlasENSG00000151176-PLBD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHP8
Splice isoforms : SwissVarQ8NHP8
Catalytic activity : Enzyme3.1.1.- [ Enzyme-Expasy ]   3.1.1.-3.1.1.- [ IntEnz-EBI ]   3.1.1.- [ BRENDA ]   3.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8NHP8
Domains : Interpro (EBI)PLipase_B-like   
Domain families : Pfam (Sanger)Phospholip_B (PF04916)   
Domain families : Pfam (NCBI)pfam04916   
Conserved Domain (NCBI)PLBD2
DMDM Disease mutations196463
Blocks (Seattle)PLBD2
SuperfamilyQ8NHP8
Human Protein Atlas [tissue]ENSG00000151176-PLBD2 [tissue]
Peptide AtlasQ8NHP8
HPRD14116
IPIIPI00169285   IPI01022769   IPI00930153   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHP8
IntAct (EBI)Q8NHP8
FunCoupENSG00000151176
BioGRIDPLBD2
STRING (EMBL)PLBD2
ZODIACPLBD2
Ontologies - Pathways
QuickGOQ8NHP8
Ontology : AmiGOlipid catabolic process  hydrolase activity  lysosomal lumen  extracellular exosome  
Ontology : EGO-EBIlipid catabolic process  hydrolase activity  lysosomal lumen  extracellular exosome  
NDEx NetworkPLBD2
Atlas of Cancer Signalling NetworkPLBD2
Wikipedia pathwaysPLBD2
Orthology - Evolution
OrthoDB196463
GeneTree (enSembl)ENSG00000151176
Phylogenetic Trees/Animal Genes : TreeFamPLBD2
HOVERGENQ8NHP8
HOGENOMQ8NHP8
Homologs : HomoloGenePLBD2
Homology/Alignments : Family Browser (UCSC)PLBD2
Gene fusions - Rearrangements
Tumor Fusion PortalPLBD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLBD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLBD2
dbVarPLBD2
ClinVarPLBD2
1000_GenomesPLBD2 
Exome Variant ServerPLBD2
ExAC (Exome Aggregation Consortium)ENSG00000151176
GNOMAD BrowserENSG00000151176
Genetic variants : HAPMAP196463
Genomic Variants (DGV)PLBD2 [DGVbeta]
DECIPHERPLBD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLBD2 
Mutations
ICGC Data PortalPLBD2 
TCGA Data PortalPLBD2 
Broad Tumor PortalPLBD2
OASIS PortalPLBD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLBD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLBD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLBD2
DgiDB (Drug Gene Interaction Database)PLBD2
DoCM (Curated mutations)PLBD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLBD2 (select a term)
intoGenPLBD2
Cancer3DPLBD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPLBD2
MedgenPLBD2
Genetic Testing Registry PLBD2
NextProtQ8NHP8 [Medical]
TSGene196463
GENETestsPLBD2
Target ValidationPLBD2
Huge Navigator PLBD2 [HugePedia]
snp3D : Map Gene to Disease196463
BioCentury BCIQPLBD2
ClinGenPLBD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196463
Chemical/Pharm GKB GenePA164724624
Clinical trialPLBD2
Miscellaneous
canSAR (ICR)PLBD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLBD2
EVEXPLBD2
GoPubMedPLBD2
iHOPPLBD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:12 CET 2017

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