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PLCXD1 (phosphatidylinositol specific phospholipase C X domain containing 1)

Identity

Alias_namesphosphatidylinositol-specific phospholipase C
Alias_symbol (synonym)FLJ11323
Other aliasLL0XNC01-136G2.1
HGNC (Hugo) PLCXD1
LocusID (NCBI) 55344
Atlas_Id 46843
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 281394 and ends at 303355 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLCXD1   23148
Cards
Entrez_Gene (NCBI)PLCXD1  55344  phosphatidylinositol specific phospholipase C X domain containing 1
AliasesLL0XNC01-136G2.1
GeneCards (Weizmann)PLCXD1
Ensembl hg19 (Hinxton)ENSG00000182378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182378 [Gene_View]  chrX:281394-303355 [Contig_View]  PLCXD1 [Vega]
ICGC DataPortalENSG00000182378
TCGA cBioPortalPLCXD1
AceView (NCBI)PLCXD1
Genatlas (Paris)PLCXD1
WikiGenes55344
SOURCE (Princeton)PLCXD1
Genetics Home Reference (NIH)PLCXD1
Genomic and cartography
GoldenPath hg38 (UCSC)PLCXD1  -     chrX:281394-303355 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLCXD1  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblPLCXD1 - Xp22.33 [CytoView hg19]  PLCXD1 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIPLCXD1 [Mapview hg19]  PLCXD1 [Mapview hg38]
OMIM300974   
Gene and transcription
Genbank (Entrez)AK002185 AK091006 AK097346 BC000888 BC005028
RefSeq transcript (Entrez)NM_018390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLCXD1
Cluster EST : UnigeneHs.522568 [ NCBI ]
CGAP (NCI)Hs.522568
Alternative Splicing GalleryENSG00000182378
Gene ExpressionPLCXD1 [ NCBI-GEO ]   PLCXD1 [ EBI - ARRAY_EXPRESS ]   PLCXD1 [ SEEK ]   PLCXD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLCXD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55344
GTEX Portal (Tissue expression)PLCXD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUJ7
Splice isoforms : SwissVarQ9NUJ7
PhosPhoSitePlusQ9NUJ7
Domaine pattern : Prosite (Expaxy)PIPLC_X_DOMAIN (PS50007)   
Domains : Interpro (EBI)PLC-like_Pdiesterase_TIM-brl    PLipase_C_PInositol-sp_X_dom   
Domain families : Pfam (Sanger)PI-PLC-X (PF00388)   
Domain families : Pfam (NCBI)pfam00388   
Domain families : Smart (EMBL)PLCXc (SM00148)  
Conserved Domain (NCBI)PLCXD1
DMDM Disease mutations55344
Blocks (Seattle)PLCXD1
SuperfamilyQ9NUJ7
Human Protein AtlasENSG00000182378
Peptide AtlasQ9NUJ7
HPRD06516
IPIIPI00020072   IPI00853426   IPI00853382   IPI00887952   IPI00853253   IPI00853172   IPI00853112   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUJ7
IntAct (EBI)Q9NUJ7
FunCoupENSG00000182378
BioGRIDPLCXD1
STRING (EMBL)PLCXD1
ZODIACPLCXD1
Ontologies - Pathways
QuickGOQ9NUJ7
Ontology : AmiGOcytoplasm  lipid metabolic process  phosphoric diester hydrolase activity  
Ontology : EGO-EBIcytoplasm  lipid metabolic process  phosphoric diester hydrolase activity  
NDEx NetworkPLCXD1
Atlas of Cancer Signalling NetworkPLCXD1
Wikipedia pathwaysPLCXD1
Orthology - Evolution
OrthoDB55344
GeneTree (enSembl)ENSG00000182378
Phylogenetic Trees/Animal Genes : TreeFamPLCXD1
HOVERGENQ9NUJ7
HOGENOMQ9NUJ7
Homologs : HomoloGenePLCXD1
Homology/Alignments : Family Browser (UCSC)PLCXD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLCXD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLCXD1
dbVarPLCXD1
ClinVarPLCXD1
1000_GenomesPLCXD1 
Exome Variant ServerPLCXD1
ExAC (Exome Aggregation Consortium)PLCXD1 (select the gene name)
Genetic variants : HAPMAP55344
Genomic Variants (DGV)PLCXD1 [DGVbeta]
DECIPHERPLCXD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLCXD1 
Mutations
ICGC Data PortalPLCXD1 
TCGA Data PortalPLCXD1 
Broad Tumor PortalPLCXD1
OASIS PortalPLCXD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLCXD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLCXD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PLCXD1
DgiDB (Drug Gene Interaction Database)PLCXD1
DoCM (Curated mutations)PLCXD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLCXD1 (select a term)
intoGenPLCXD1
Cancer3DPLCXD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300974   
Orphanet
MedgenPLCXD1
Genetic Testing Registry PLCXD1
NextProtQ9NUJ7 [Medical]
TSGene55344
GENETestsPLCXD1
Target ValidationPLCXD1
Huge Navigator PLCXD1 [HugePedia]
snp3D : Map Gene to Disease55344
BioCentury BCIQPLCXD1
ClinGenPLCXD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55344
Chemical/Pharm GKB GenePA134878642
Clinical trialPLCXD1
Miscellaneous
canSAR (ICR)PLCXD1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLCXD1
EVEXPLCXD1
GoPubMedPLCXD1
iHOPPLCXD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:25:08 CEST 2017

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