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PLCXD2 (phosphatidylinositol specific phospholipase C X domain containing 2)

Identity

Alias_namesphosphatidylinositol-specific phospholipase C
Alias_symbol (synonym)FLJ31579
Other alias-
HGNC (Hugo) PLCXD2
LocusID (NCBI) 257068
Atlas_Id 47271
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 111674676 and ends at 111846447 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLCXD2   26462
Cards
Entrez_Gene (NCBI)PLCXD2  257068  phosphatidylinositol specific phospholipase C X domain containing 2
Aliases
GeneCards (Weizmann)PLCXD2
Ensembl hg19 (Hinxton)ENSG00000240891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240891 [Gene_View]  chr3:111674676-111846447 [Contig_View]  PLCXD2 [Vega]
ICGC DataPortalENSG00000240891
TCGA cBioPortalPLCXD2
AceView (NCBI)PLCXD2
Genatlas (Paris)PLCXD2
WikiGenes257068
SOURCE (Princeton)PLCXD2
Genetics Home Reference (NIH)PLCXD2
Genomic and cartography
GoldenPath hg38 (UCSC)PLCXD2  -     chr3:111674676-111846447 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLCXD2  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblPLCXD2 - 3q13.2 [CytoView hg19]  PLCXD2 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIPLCXD2 [Mapview hg19]  PLCXD2 [Mapview hg38]
OMIM617015   
Gene and transcription
Genbank (Entrez)AK056141 AK091636 AK095647 AK095735 AL712245
RefSeq transcript (Entrez)NM_001134478 NM_001185106 NM_153268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLCXD2
Cluster EST : UnigeneHs.603252 [ NCBI ]
CGAP (NCI)Hs.603252
Alternative Splicing GalleryENSG00000240891
Gene ExpressionPLCXD2 [ NCBI-GEO ]   PLCXD2 [ EBI - ARRAY_EXPRESS ]   PLCXD2 [ SEEK ]   PLCXD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PLCXD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257068
GTEX Portal (Tissue expression)PLCXD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VAA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VAA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VAA5
Splice isoforms : SwissVarQ0VAA5
PhosPhoSitePlusQ0VAA5
Domaine pattern : Prosite (Expaxy)PIPLC_X_DOMAIN (PS50007)   
Domains : Interpro (EBI)PLC-like_Pdiesterase_TIM-brl    PLipase_C_PInositol-sp_X_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PLCXc (SM00148)  
Conserved Domain (NCBI)PLCXD2
DMDM Disease mutations257068
Blocks (Seattle)PLCXD2
SuperfamilyQ0VAA5
Human Protein AtlasENSG00000240891
Peptide AtlasQ0VAA5
HPRD07114
IPIIPI00910529   IPI00867633   IPI00945467   
Protein Interaction databases
DIP (DOE-UCLA)Q0VAA5
IntAct (EBI)Q0VAA5
FunCoupENSG00000240891
BioGRIDPLCXD2
STRING (EMBL)PLCXD2
ZODIACPLCXD2
Ontologies - Pathways
QuickGOQ0VAA5
Ontology : AmiGOsignal transducer activity  nucleus  signal transduction  phosphoric diester hydrolase activity  lipid catabolic process  
Ontology : EGO-EBIsignal transducer activity  nucleus  signal transduction  phosphoric diester hydrolase activity  lipid catabolic process  
NDEx NetworkPLCXD2
Atlas of Cancer Signalling NetworkPLCXD2
Wikipedia pathwaysPLCXD2
Orthology - Evolution
OrthoDB257068
GeneTree (enSembl)ENSG00000240891
Phylogenetic Trees/Animal Genes : TreeFamPLCXD2
HOVERGENQ0VAA5
HOGENOMQ0VAA5
Homologs : HomoloGenePLCXD2
Homology/Alignments : Family Browser (UCSC)PLCXD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLCXD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLCXD2
dbVarPLCXD2
ClinVarPLCXD2
1000_GenomesPLCXD2 
Exome Variant ServerPLCXD2
ExAC (Exome Aggregation Consortium)PLCXD2 (select the gene name)
Genetic variants : HAPMAP257068
Genomic Variants (DGV)PLCXD2 [DGVbeta]
DECIPHERPLCXD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLCXD2 
Mutations
ICGC Data PortalPLCXD2 
TCGA Data PortalPLCXD2 
Broad Tumor PortalPLCXD2
OASIS PortalPLCXD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLCXD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLCXD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLCXD2
DgiDB (Drug Gene Interaction Database)PLCXD2
DoCM (Curated mutations)PLCXD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLCXD2 (select a term)
intoGenPLCXD2
Cancer3DPLCXD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617015   
Orphanet
MedgenPLCXD2
Genetic Testing Registry PLCXD2
NextProtQ0VAA5 [Medical]
TSGene257068
GENETestsPLCXD2
Target ValidationPLCXD2
Huge Navigator PLCXD2 [HugePedia]
snp3D : Map Gene to Disease257068
BioCentury BCIQPLCXD2
ClinGenPLCXD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257068
Chemical/Pharm GKB GenePA134928848
Clinical trialPLCXD2
Miscellaneous
canSAR (ICR)PLCXD2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLCXD2
EVEXPLCXD2
GoPubMedPLCXD2
iHOPPLCXD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:03:32 CEST 2017

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