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PLD5 (phospholipase D family member 5)

Identity

Alias_namesphospholipase D family, member 5
Alias_symbol (synonym)FLJ40773
Other aliasPLDC
HGNC (Hugo) PLD5
LocusID (NCBI) 200150
Atlas_Id 71972
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 242088387 and ends at 242449482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD55 (1q32.2) / PLD5 (1q43)CTNND1 (11q12.1) / PLD5 (1q43)PLD5 (1q43) / NAMPT (7q22.3)
PLD5 (1q43) / SPTLC1 (9q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLD5   26879
Cards
Entrez_Gene (NCBI)PLD5  200150  phospholipase D family member 5
AliasesPLDC
GeneCards (Weizmann)PLD5
Ensembl hg19 (Hinxton)ENSG00000180287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180287 [Gene_View]  chr1:242088387-242449482 [Contig_View]  PLD5 [Vega]
ICGC DataPortalENSG00000180287
TCGA cBioPortalPLD5
AceView (NCBI)PLD5
Genatlas (Paris)PLD5
WikiGenes200150
SOURCE (Princeton)PLD5
Genetics Home Reference (NIH)PLD5
Genomic and cartography
GoldenPath hg38 (UCSC)PLD5  -     chr1:242088387-242449482 -  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLD5  -     1q43   [Description]    (hg19-Feb_2009)
EnsemblPLD5 - 1q43 [CytoView hg19]  PLD5 - 1q43 [CytoView hg38]
Mapping of homologs : NCBIPLD5 [Mapview hg19]  PLD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091691 AK098092 AK295421 AK307857 AL133851
RefSeq transcript (Entrez)NM_001195811 NM_001195812 NM_001320272 NM_152666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLD5
Cluster EST : UnigeneHs.672452 [ NCBI ]
CGAP (NCI)Hs.672452
Alternative Splicing GalleryENSG00000180287
Gene ExpressionPLD5 [ NCBI-GEO ]   PLD5 [ EBI - ARRAY_EXPRESS ]   PLD5 [ SEEK ]   PLD5 [ MEM ]
Gene Expression Viewer (FireBrowse)PLD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200150
GTEX Portal (Tissue expression)PLD5
Human Protein AtlasENSG00000180287-PLD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7P1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7P1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7P1
Splice isoforms : SwissVarQ8N7P1
PhosPhoSitePlusQ8N7P1
Domains : Interpro (EBI)PLDc_3    PLipase_D/transphosphatidylase   
Domain families : Pfam (Sanger)PLDc_3 (PF13918)   
Domain families : Pfam (NCBI)pfam13918   
Domain families : Smart (EMBL)PLDc (SM00155)  
Conserved Domain (NCBI)PLD5
DMDM Disease mutations200150
Blocks (Seattle)PLD5
SuperfamilyQ8N7P1
Human Protein Atlas [tissue]ENSG00000180287-PLD5 [tissue]
Peptide AtlasQ8N7P1
HPRD08812
IPIIPI00847600   IPI00847136   IPI00477357   IPI00167254   IPI01013879   IPI01013455   IPI01014256   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7P1
IntAct (EBI)Q8N7P1
FunCoupENSG00000180287
BioGRIDPLD5
STRING (EMBL)PLD5
ZODIACPLD5
Ontologies - Pathways
QuickGOQ8N7P1
Ontology : AmiGOcatalytic activity  integral component of membrane  
Ontology : EGO-EBIcatalytic activity  integral component of membrane  
NDEx NetworkPLD5
Atlas of Cancer Signalling NetworkPLD5
Wikipedia pathwaysPLD5
Orthology - Evolution
OrthoDB200150
GeneTree (enSembl)ENSG00000180287
Phylogenetic Trees/Animal Genes : TreeFamPLD5
HOVERGENQ8N7P1
HOGENOMQ8N7P1
Homologs : HomoloGenePLD5
Homology/Alignments : Family Browser (UCSC)PLD5
Gene fusions - Rearrangements
Tumor Fusion PortalPLD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLD5
dbVarPLD5
ClinVarPLD5
1000_GenomesPLD5 
Exome Variant ServerPLD5
ExAC (Exome Aggregation Consortium)ENSG00000180287
GNOMAD BrowserENSG00000180287
Genetic variants : HAPMAP200150
Genomic Variants (DGV)PLD5 [DGVbeta]
DECIPHERPLD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLD5 
Mutations
ICGC Data PortalPLD5 
TCGA Data PortalPLD5 
Broad Tumor PortalPLD5
OASIS PortalPLD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLD5
DgiDB (Drug Gene Interaction Database)PLD5
DoCM (Curated mutations)PLD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLD5 (select a term)
intoGenPLD5
Cancer3DPLD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPLD5
MedgenPLD5
Genetic Testing Registry PLD5
NextProtQ8N7P1 [Medical]
TSGene200150
GENETestsPLD5
Target ValidationPLD5
Huge Navigator PLD5 [HugePedia]
snp3D : Map Gene to Disease200150
BioCentury BCIQPLD5
ClinGenPLD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200150
Chemical/Pharm GKB GenePA142671168
Clinical trialPLD5
Miscellaneous
canSAR (ICR)PLD5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLD5
EVEXPLD5
GoPubMedPLD5
iHOPPLD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:23 CET 2017

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