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PLEKHJ1 (pleckstrin homology domain containing J1)

Identity

Alias_namespleckstrin homology domain containing, family J member 1
Alias_symbol (synonym)FLJ10297
Other aliasGNRPX
HGNC (Hugo) PLEKHJ1
LocusID (NCBI) 55111
Atlas_Id 71985
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2229952 and ends at 2236353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NOL7 (6p23) / PLEKHJ1 (19p13.3)PLEKHJ1 (19p13.3) / PAPSS2 (10q23.2)PLEKHJ1 (19p13.3) / PDCD6IP (3p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLEKHJ1   18211
Cards
Entrez_Gene (NCBI)PLEKHJ1  55111  pleckstrin homology domain containing J1
AliasesGNRPX
GeneCards (Weizmann)PLEKHJ1
Ensembl hg19 (Hinxton)ENSG00000104886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104886 [Gene_View]  chr19:2229952-2236353 [Contig_View]  PLEKHJ1 [Vega]
ICGC DataPortalENSG00000104886
TCGA cBioPortalPLEKHJ1
AceView (NCBI)PLEKHJ1
Genatlas (Paris)PLEKHJ1
WikiGenes55111
SOURCE (Princeton)PLEKHJ1
Genetics Home Reference (NIH)PLEKHJ1
Genomic and cartography
GoldenPath hg38 (UCSC)PLEKHJ1  -     chr19:2229952-2236353 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLEKHJ1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblPLEKHJ1 - 19p13.3 [CytoView hg19]  PLEKHJ1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPLEKHJ1 [Mapview hg19]  PLEKHJ1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001159 AK092742 AK097723 AK098725 BC003084
RefSeq transcript (Entrez)NM_001300836 NM_018049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLEKHJ1
Cluster EST : UnigeneHs.713641 [ NCBI ]
CGAP (NCI)Hs.713641
Alternative Splicing GalleryENSG00000104886
Gene ExpressionPLEKHJ1 [ NCBI-GEO ]   PLEKHJ1 [ EBI - ARRAY_EXPRESS ]   PLEKHJ1 [ SEEK ]   PLEKHJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLEKHJ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55111
GTEX Portal (Tissue expression)PLEKHJ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW61
Splice isoforms : SwissVarQ9NW61
PhosPhoSitePlusQ9NW61
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)PLEKHJ1
DMDM Disease mutations55111
Blocks (Seattle)PLEKHJ1
SuperfamilyQ9NW61
Human Protein AtlasENSG00000104886
Peptide AtlasQ9NW61
HPRD15150
IPIIPI00644031   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW61
IntAct (EBI)Q9NW61
FunCoupENSG00000104886
BioGRIDPLEKHJ1
STRING (EMBL)PLEKHJ1
ZODIACPLEKHJ1
Ontologies - Pathways
QuickGOQ9NW61
Ontology : AmiGOreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  retrograde transport, endosome to Golgi  recycling endosome  
Ontology : EGO-EBIreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  retrograde transport, endosome to Golgi  recycling endosome  
NDEx NetworkPLEKHJ1
Atlas of Cancer Signalling NetworkPLEKHJ1
Wikipedia pathwaysPLEKHJ1
Orthology - Evolution
OrthoDB55111
GeneTree (enSembl)ENSG00000104886
Phylogenetic Trees/Animal Genes : TreeFamPLEKHJ1
HOVERGENQ9NW61
HOGENOMQ9NW61
Homologs : HomoloGenePLEKHJ1
Homology/Alignments : Family Browser (UCSC)PLEKHJ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLEKHJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLEKHJ1
dbVarPLEKHJ1
ClinVarPLEKHJ1
1000_GenomesPLEKHJ1 
Exome Variant ServerPLEKHJ1
ExAC (Exome Aggregation Consortium)PLEKHJ1 (select the gene name)
Genetic variants : HAPMAP55111
Genomic Variants (DGV)PLEKHJ1 [DGVbeta]
DECIPHERPLEKHJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLEKHJ1 
Mutations
ICGC Data PortalPLEKHJ1 
TCGA Data PortalPLEKHJ1 
Broad Tumor PortalPLEKHJ1
OASIS PortalPLEKHJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLEKHJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLEKHJ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLEKHJ1
DgiDB (Drug Gene Interaction Database)PLEKHJ1
DoCM (Curated mutations)PLEKHJ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLEKHJ1 (select a term)
intoGenPLEKHJ1
Cancer3DPLEKHJ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLEKHJ1
Genetic Testing Registry PLEKHJ1
NextProtQ9NW61 [Medical]
TSGene55111
GENETestsPLEKHJ1
Target ValidationPLEKHJ1
Huge Navigator PLEKHJ1 [HugePedia]
snp3D : Map Gene to Disease55111
BioCentury BCIQPLEKHJ1
ClinGenPLEKHJ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55111
Chemical/Pharm GKB GenePA134936152
Clinical trialPLEKHJ1
Miscellaneous
canSAR (ICR)PLEKHJ1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLEKHJ1
EVEXPLEKHJ1
GoPubMedPLEKHJ1
iHOPPLEKHJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:36 CEST 2017

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