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PLEKHM1P (pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene)

Identity

Other alias-
HGNC (Hugo) PLEKHM1P
LocusID (NCBI) 440456
Atlas_Id 71987
Location 17q24.1  [Link to chromosome band 17q24]
Location_base_pair Starts at 62780959 and ends at 62833302 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLEKHM1P   35411
Cards
Entrez_Gene (NCBI)PLEKHM1P  440456  pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene
Aliases
GeneCards (Weizmann)PLEKHM1P
Ensembl hg19 (Hinxton) [Gene_View]  chr17:62780959-62833302 [Contig_View]  PLEKHM1P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:62780959-62833302 [Contig_View]  PLEKHM1P [Vega]
TCGA cBioPortalPLEKHM1P
AceView (NCBI)PLEKHM1P
Genatlas (Paris)PLEKHM1P
WikiGenes440456
SOURCE (Princeton)PLEKHM1P
Genetics Home Reference (NIH)PLEKHM1P
Genomic and cartography
GoldenPath hg19 (UCSC)PLEKHM1P  -     chr17:62780959-62833302 -  17q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLEKHM1P  -     17q24.1   [Description]    (hg38-Dec_2013)
EnsemblPLEKHM1P - 17q24.1 [CytoView hg19]  PLEKHM1P - 17q24.1 [CytoView hg38]
Mapping of homologs : NCBIPLEKHM1P [Mapview hg19]  PLEKHM1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301174 AK303621 AK304173 AK308180 AL833315
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)PLEKHM1P
Cluster EST : UnigeneHs.646585 [ NCBI ]
CGAP (NCI)Hs.646585
Gene ExpressionPLEKHM1P [ NCBI-GEO ]   PLEKHM1P [ EBI - ARRAY_EXPRESS ]   PLEKHM1P [ SEEK ]   PLEKHM1P [ MEM ]
Gene Expression Viewer (FireBrowse)PLEKHM1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440456
GTEX Portal (Tissue expression)PLEKHM1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YJ1
Splice isoforms : SwissVarQ69YJ1
PhosPhoSitePlusQ69YJ1
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)DUF4206    PE/DAG-bd    PH_domain    PH_like_dom   
Domain families : Pfam (Sanger)DUF4206 (PF13901)   
Domain families : Pfam (NCBI)pfam13901   
Domain families : Smart (EMBL)C1 (SM00109)  PH (SM00233)  
Conserved Domain (NCBI)PLEKHM1P
DMDM Disease mutations440456
Blocks (Seattle)PLEKHM1P
SuperfamilyQ69YJ1
Peptide AtlasQ69YJ1
IPIIPI00740891   
Protein Interaction databases
DIP (DOE-UCLA)Q69YJ1
IntAct (EBI)Q69YJ1
BioGRIDPLEKHM1P
STRING (EMBL)PLEKHM1P
ZODIACPLEKHM1P
Ontologies - Pathways
QuickGOQ69YJ1
Ontology : AmiGOintracellular  intracellular signal transduction  metal ion binding  
Ontology : EGO-EBIintracellular  intracellular signal transduction  metal ion binding  
NDEx NetworkPLEKHM1P
Atlas of Cancer Signalling NetworkPLEKHM1P
Wikipedia pathwaysPLEKHM1P
Orthology - Evolution
OrthoDB440456
Phylogenetic Trees/Animal Genes : TreeFamPLEKHM1P
HOVERGENQ69YJ1
HOGENOMQ69YJ1
Homologs : HomoloGenePLEKHM1P
Homology/Alignments : Family Browser (UCSC)PLEKHM1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLEKHM1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLEKHM1P
dbVarPLEKHM1P
ClinVarPLEKHM1P
1000_GenomesPLEKHM1P 
Exome Variant ServerPLEKHM1P
ExAC (Exome Aggregation Consortium)PLEKHM1P (select the gene name)
Genetic variants : HAPMAP440456
Genomic Variants (DGV)PLEKHM1P [DGVbeta]
DECIPHER (Syndromes)17:62780959-62833302  
CONAN: Copy Number AnalysisPLEKHM1P 
Mutations
ICGC Data PortalPLEKHM1P 
TCGA Data PortalPLEKHM1P 
Broad Tumor PortalPLEKHM1P
OASIS PortalPLEKHM1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLEKHM1P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLEKHM1P
DgiDB (Drug Gene Interaction Database)PLEKHM1P
DoCM (Curated mutations)PLEKHM1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLEKHM1P (select a term)
intoGenPLEKHM1P
Cancer3DPLEKHM1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLEKHM1P
Genetic Testing Registry PLEKHM1P
NextProtQ69YJ1 [Medical]
TSGene440456
GENETestsPLEKHM1P
Huge Navigator PLEKHM1P [HugePedia]
snp3D : Map Gene to Disease440456
BioCentury BCIQPLEKHM1P
ClinGenPLEKHM1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440456
Chemical/Pharm GKB GenePA164724626
Clinical trialPLEKHM1P
Miscellaneous
canSAR (ICR)PLEKHM1P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLEKHM1P
EVEXPLEKHM1P
GoPubMedPLEKHM1P
iHOPPLEKHM1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:54 CET 2017

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