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PLET1 (placenta expressed transcript 1)

Identity

Alias_namesC11orf34
chromosome 11 open reading frame 34
Other alias
HGNC (Hugo) PLET1
LocusID (NCBI) 349633
Atlas_Id 71992
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112248153 and ends at 112260860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NADSYN1 (11q13.4) / PLET1 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLET1   30053
Cards
Entrez_Gene (NCBI)PLET1  349633  placenta expressed transcript 1
AliasesC11orf34
GeneCards (Weizmann)PLET1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:112248153-112260860 [Contig_View]  PLET1 [Vega]
TCGA cBioPortalPLET1
AceView (NCBI)PLET1
Genatlas (Paris)PLET1
WikiGenes349633
SOURCE (Princeton)PLET1
Genetics Home Reference (NIH)PLET1
Genomic and cartography
GoldenPath hg38 (UCSC)PLET1  -     chr11:112248153-112260860 -  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLET1  -     11q23.1   [Description]    (hg19-Feb_2009)
EnsemblPLET1 - 11q23.1 [CytoView hg19]  PLET1 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIPLET1 [Mapview hg19]  PLET1 [Mapview hg38]
OMIM611904   
Gene and transcription
Genbank (Entrez)AY364431 AY364432 AY364433 AY364434 AY364435
RefSeq transcript (Entrez)NM_001145024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLET1
Cluster EST : UnigeneHs.632097 [ NCBI ]
CGAP (NCI)Hs.632097
Gene ExpressionPLET1 [ NCBI-GEO ]   PLET1 [ EBI - ARRAY_EXPRESS ]   PLET1 [ SEEK ]   PLET1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLET1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)349633
GTEX Portal (Tissue expression)PLET1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UQ28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UQ28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UQ28
Splice isoforms : SwissVarQ6UQ28
PhosPhoSitePlusQ6UQ28
Domains : Interpro (EBI)PLET1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLET1
DMDM Disease mutations349633
Blocks (Seattle)PLET1
SuperfamilyQ6UQ28
Peptide AtlasQ6UQ28
IPIIPI00398935   IPI00816649   IPI00975966   
Protein Interaction databases
DIP (DOE-UCLA)Q6UQ28
IntAct (EBI)Q6UQ28
BioGRIDPLET1
STRING (EMBL)PLET1
ZODIACPLET1
Ontologies - Pathways
QuickGOQ6UQ28
Ontology : AmiGOnegative regulation of cell-matrix adhesion  negative regulation of cell-matrix adhesion  extracellular region  plasma membrane  C-terminal protein lipidation  external side of plasma membrane  apical plasma membrane  apical plasma membrane  cell differentiation  positive regulation of cell migration  positive regulation of cell migration  anchored component of membrane  wound healing, spreading of epidermal cells  wound healing, spreading of epidermal cells  
Ontology : EGO-EBInegative regulation of cell-matrix adhesion  negative regulation of cell-matrix adhesion  extracellular region  plasma membrane  C-terminal protein lipidation  external side of plasma membrane  apical plasma membrane  apical plasma membrane  cell differentiation  positive regulation of cell migration  positive regulation of cell migration  anchored component of membrane  wound healing, spreading of epidermal cells  wound healing, spreading of epidermal cells  
NDEx NetworkPLET1
Atlas of Cancer Signalling NetworkPLET1
Wikipedia pathwaysPLET1
Orthology - Evolution
OrthoDB349633
Phylogenetic Trees/Animal Genes : TreeFamPLET1
HOVERGENQ6UQ28
HOGENOMQ6UQ28
Homologs : HomoloGenePLET1
Homology/Alignments : Family Browser (UCSC)PLET1
Gene fusions - Rearrangements
Fusion: Tumor Portal PLET1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLET1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLET1
dbVarPLET1
ClinVarPLET1
1000_GenomesPLET1 
Exome Variant ServerPLET1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP349633
Genomic Variants (DGV)PLET1 [DGVbeta]
DECIPHERPLET1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLET1 
Mutations
ICGC Data PortalPLET1 
TCGA Data PortalPLET1 
Broad Tumor PortalPLET1
OASIS PortalPLET1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLET1
BioMutasearch PLET1
DgiDB (Drug Gene Interaction Database)PLET1
DoCM (Curated mutations)PLET1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLET1 (select a term)
intoGenPLET1
Cancer3DPLET1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611904   
Orphanet
MedgenPLET1
Genetic Testing Registry PLET1
NextProtQ6UQ28 [Medical]
TSGene349633
GENETestsPLET1
Target ValidationPLET1
Huge Navigator PLET1 [HugePedia]
snp3D : Map Gene to Disease349633
BioCentury BCIQPLET1
ClinGenPLET1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD349633
Chemical/Pharm GKB GenePA134915529
Clinical trialPLET1
Miscellaneous
canSAR (ICR)PLET1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLET1
EVEXPLET1
GoPubMedPLET1
iHOPPLET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:22:50 CET 2017

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