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PLET1 (placenta expressed transcript 1)

Identity

Alias (NCBI)C11orf34
HGNC (Hugo) PLET1
HGNC Alias nameplacenta-expressed transcript 1
HGNC Previous nameC11orf34
HGNC Previous namechromosome 11 open reading frame 34
LocusID (NCBI) 349633
Atlas_Id 71992
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 112248153 and ends at 112260860 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NADSYN1 (11q13.4)::PLET1 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PLET1   30053
Cards
Entrez_Gene (NCBI)PLET1    placenta expressed transcript 1
AliasesC11orf34
GeneCards (Weizmann)PLET1
Ensembl hg19 (Hinxton)ENSG00000188771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188771 [Gene_View]  ENSG00000188771 [Sequence]  chr11:112248153-112260860 [Contig_View]  PLET1 [Vega]
ICGC DataPortalENSG00000188771
TCGA cBioPortalPLET1
AceView (NCBI)PLET1
Genatlas (Paris)PLET1
SOURCE (Princeton)PLET1
Genetics Home Reference (NIH)PLET1
Genomic and cartography
GoldenPath hg38 (UCSC)PLET1  -     chr11:112248153-112260860 -  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLET1  -     11q23.1   [Description]    (hg19-Feb_2009)
GoldenPathPLET1 - 11q23.1 [CytoView hg19]  PLET1 - 11q23.1 [CytoView hg38]
ImmunoBaseENSG00000188771
Genome Data Viewer NCBIPLET1 [Mapview hg19]  
OMIM611904   
Gene and transcription
Genbank (Entrez)AY364431 AY364432 AY364433 AY364434 AY364435
RefSeq transcript (Entrez)NM_001145024
Consensus coding sequences : CCDS (NCBI)PLET1
Gene ExpressionPLET1 [ NCBI-GEO ]   PLET1 [ EBI - ARRAY_EXPRESS ]   PLET1 [ SEEK ]   PLET1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLET1 [ Firebrowse - Broad ]
GenevisibleExpression of PLET1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)349633
GTEX Portal (Tissue expression)PLET1
Human Protein AtlasENSG00000188771-PLET1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UQ28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UQ28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UQ28
PhosPhoSitePlusQ6UQ28
Domains : Interpro (EBI)PLET1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLET1
SuperfamilyQ6UQ28
AlphaFold pdb e-kbQ6UQ28   
Human Protein Atlas [tissue]ENSG00000188771-PLET1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6UQ28
IntAct (EBI)Q6UQ28
BioGRIDPLET1
STRING (EMBL)PLET1
ZODIACPLET1
Ontologies - Pathways
QuickGOQ6UQ28
Ontology : AmiGOnegative regulation of cell-matrix adhesion  negative regulation of cell-matrix adhesion  extracellular region  plasma membrane  external side of plasma membrane  apical plasma membrane  apical plasma membrane  cell differentiation  positive regulation of cell migration  positive regulation of cell migration  anchored component of membrane  wound healing, spreading of epidermal cells  wound healing, spreading of epidermal cells  
Ontology : EGO-EBInegative regulation of cell-matrix adhesion  negative regulation of cell-matrix adhesion  extracellular region  plasma membrane  external side of plasma membrane  apical plasma membrane  apical plasma membrane  cell differentiation  positive regulation of cell migration  positive regulation of cell migration  anchored component of membrane  wound healing, spreading of epidermal cells  wound healing, spreading of epidermal cells  
NDEx NetworkPLET1
Atlas of Cancer Signalling NetworkPLET1
Wikipedia pathwaysPLET1
Orthology - Evolution
OrthoDB349633
GeneTree (enSembl)ENSG00000188771
Phylogenetic Trees/Animal Genes : TreeFamPLET1
Homologs : HomoloGenePLET1
Homology/Alignments : Family Browser (UCSC)PLET1
Gene fusions - Rearrangements
Fusion : QuiverPLET1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLET1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLET1
dbVarPLET1
ClinVarPLET1
MonarchPLET1
1000_GenomesPLET1 
Exome Variant ServerPLET1
GNOMAD BrowserENSG00000188771
Varsome BrowserPLET1
ACMGPLET1 variants
VarityQ6UQ28
Genomic Variants (DGV)PLET1 [DGVbeta]
DECIPHERPLET1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLET1 
Mutations
ICGC Data PortalPLET1 
TCGA Data PortalPLET1 
Broad Tumor PortalPLET1
OASIS PortalPLET1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLET1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPLET1
Mutations and Diseases : HGMDPLET1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPLET1
DgiDB (Drug Gene Interaction Database)PLET1
DoCM (Curated mutations)PLET1
CIViC (Clinical Interpretations of Variants in Cancer)PLET1
Cancer3DPLET1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611904   
Orphanet
DisGeNETPLET1
MedgenPLET1
Genetic Testing Registry PLET1
NextProtQ6UQ28 [Medical]
GENETestsPLET1
Target ValidationPLET1
Huge Navigator PLET1 [HugePedia]
ClinGenPLET1
Clinical trials, drugs, therapy
MyCancerGenomePLET1
Protein Interactions : CTDPLET1
Pharm GKB GenePA134915529
PharosQ6UQ28
Clinical trialPLET1
Miscellaneous
canSAR (ICR)PLET1
HarmonizomePLET1
ARCHS4PLET1
DataMed IndexPLET1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPLET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:46:18 CET 2022

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