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PLGLA (plasminogen-like A (pseudogene))

Identity

Alias_namesPLGP2
PLGLA1
plasminogen pseudogene 2
plasminogen-like A1
plasminogen-like A
Other aliasPRGA
HGNC (Hugo) PLGLA
LocusID (NCBI) 285189
Atlas_Id 71993
Location 2q12.2  [Link to chromosome band 2q12]
Location_base_pair Starts at 106382114 and ends at 106391395 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLGLA   9074
Cards
Entrez_Gene (NCBI)PLGLA  285189  plasminogen-like A (pseudogene)
AliasesPLGLA1; PLGP2; PRGA
GeneCards (Weizmann)PLGLA
Ensembl hg19 (Hinxton)ENSG00000240935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240935 [Gene_View]  chr2:106382114-106391395 [Contig_View]  PLGLA [Vega]
ICGC DataPortalENSG00000240935
TCGA cBioPortalPLGLA
AceView (NCBI)PLGLA
Genatlas (Paris)PLGLA
WikiGenes285189
SOURCE (Princeton)PLGLA
Genetics Home Reference (NIH)PLGLA
Genomic and cartography
GoldenPath hg38 (UCSC)PLGLA  -     chr2:106382114-106391395 +  2q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLGLA  -     2q12.2   [Description]    (hg19-Feb_2009)
EnsemblPLGLA - 2q12.2 [CytoView hg19]  PLGLA - 2q12.2 [CytoView hg38]
Mapping of homologs : NCBIPLGLA [Mapview hg19]  PLGLA [Mapview hg38]
OMIM612212   
Gene and transcription
Genbank (Entrez)DA634686 U67178
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLGLA
Cluster EST : UnigeneHs.631263 [ NCBI ]
CGAP (NCI)Hs.631263
Alternative Splicing GalleryENSG00000240935
Gene ExpressionPLGLA [ NCBI-GEO ]   PLGLA [ EBI - ARRAY_EXPRESS ]   PLGLA [ SEEK ]   PLGLA [ MEM ]
Gene Expression Viewer (FireBrowse)PLGLA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285189
GTEX Portal (Tissue expression)PLGLA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15195   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15195  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15195
Splice isoforms : SwissVarQ15195
PhosPhoSitePlusQ15195
Domaine pattern : Prosite (Expaxy)PAN (PS50948)   
Domains : Interpro (EBI)Pan_app    Plasminogen-rel   
Domain families : Pfam (Sanger)PAN_1 (PF00024)   
Domain families : Pfam (NCBI)pfam00024   
Domain families : Smart (EMBL)PAN_AP (SM00473)  
Conserved Domain (NCBI)PLGLA
DMDM Disease mutations285189
Blocks (Seattle)PLGLA
SuperfamilyQ15195
Human Protein AtlasENSG00000240935
Peptide AtlasQ15195
IPIIPI00156243   IPI01015497   
Protein Interaction databases
DIP (DOE-UCLA)Q15195
IntAct (EBI)Q15195
FunCoupENSG00000240935
BioGRIDPLGLA
STRING (EMBL)PLGLA
ZODIACPLGLA
Ontologies - Pathways
QuickGOQ15195
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPLGLA
Atlas of Cancer Signalling NetworkPLGLA
Wikipedia pathwaysPLGLA
Orthology - Evolution
OrthoDB285189
GeneTree (enSembl)ENSG00000240935
Phylogenetic Trees/Animal Genes : TreeFamPLGLA
HOVERGENQ15195
HOGENOMQ15195
Homologs : HomoloGenePLGLA
Homology/Alignments : Family Browser (UCSC)PLGLA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLGLA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLGLA
dbVarPLGLA
ClinVarPLGLA
1000_GenomesPLGLA 
Exome Variant ServerPLGLA
ExAC (Exome Aggregation Consortium)PLGLA (select the gene name)
Genetic variants : HAPMAP285189
Genomic Variants (DGV)PLGLA [DGVbeta]
DECIPHERPLGLA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLGLA 
Mutations
ICGC Data PortalPLGLA 
TCGA Data PortalPLGLA 
Broad Tumor PortalPLGLA
OASIS PortalPLGLA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLGLA
BioMutasearch PLGLA
DgiDB (Drug Gene Interaction Database)PLGLA
DoCM (Curated mutations)PLGLA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLGLA (select a term)
intoGenPLGLA
Cancer3DPLGLA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612212   
Orphanet
MedgenPLGLA
Genetic Testing Registry PLGLA
NextProtQ15195 [Medical]
TSGene285189
GENETestsPLGLA
Huge Navigator PLGLA [HugePedia]
snp3D : Map Gene to Disease285189
BioCentury BCIQPLGLA
ClinGenPLGLA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285189
Chemical/Pharm GKB GenePA33408
Clinical trialPLGLA
Miscellaneous
canSAR (ICR)PLGLA (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLGLA
EVEXPLGLA
GoPubMedPLGLA
iHOPPLGLA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:48:54 CEST 2017

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