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PLGLB1 (plasminogen-like B1)

Identity

Alias_namesPLGL
plasminogen-like
Alias_symbol (synonym)PRP-B
Other aliasPLGP1
PRGB
HGNC (Hugo) PLGLB1
LocusID (NCBI) 5343
Atlas_Id 71994
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 87010465 and ends at 87021846 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLGLB1   9072
Cards
Entrez_Gene (NCBI)PLGLB1  5343  plasminogen-like B1
AliasesPLGL; PLGP1; PRGB; PRP-B
GeneCards (Weizmann)PLGLB1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:87010465-87021846 [Contig_View]  PLGLB1 [Vega]
TCGA cBioPortalPLGLB1
AceView (NCBI)PLGLB1
Genatlas (Paris)PLGLB1
WikiGenes5343
SOURCE (Princeton)PLGLB1
Genetics Home Reference (NIH)PLGLB1
Genomic and cartography
GoldenPath hg38 (UCSC)PLGLB1  -     chr2:87010465-87021846 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLGLB1  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblPLGLB1 - 2p11.2 [CytoView hg19]  PLGLB1 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIPLGLB1 [Mapview hg19]  PLGLB1 [Mapview hg38]
OMIM173340   
Gene and transcription
Genbank (Entrez)BC070296 BC107767 BC109248
RefSeq transcript (Entrez)NM_001032392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLGLB1
Cluster EST : UnigeneHs.652174 [ NCBI ]
CGAP (NCI)Hs.652174
Gene ExpressionPLGLB1 [ NCBI-GEO ]   PLGLB1 [ EBI - ARRAY_EXPRESS ]   PLGLB1 [ SEEK ]   PLGLB1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLGLB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5343
GTEX Portal (Tissue expression)PLGLB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02325
Splice isoforms : SwissVarQ02325
PhosPhoSitePlusQ02325
Domaine pattern : Prosite (Expaxy)PAN (PS50948)   
Domains : Interpro (EBI)Pan_app    Plasminogen-rel   
Domain families : Pfam (Sanger)PAN_1 (PF00024)   
Domain families : Pfam (NCBI)pfam00024   
Domain families : Smart (EMBL)PAN_AP (SM00473)  
Conserved Domain (NCBI)PLGLB1
DMDM Disease mutations5343
Blocks (Seattle)PLGLB1
SuperfamilyQ02325
Peptide AtlasQ02325
Protein Interaction databases
DIP (DOE-UCLA)Q02325
IntAct (EBI)Q02325
BioGRIDPLGLB1
STRING (EMBL)PLGLB1
ZODIACPLGLB1
Ontologies - Pathways
QuickGOQ02325
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPLGLB1
Atlas of Cancer Signalling NetworkPLGLB1
Wikipedia pathwaysPLGLB1
Orthology - Evolution
OrthoDB5343
Phylogenetic Trees/Animal Genes : TreeFamPLGLB1
HOVERGENQ02325
HOGENOMQ02325
Homologs : HomoloGenePLGLB1
Homology/Alignments : Family Browser (UCSC)PLGLB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLGLB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLGLB1
dbVarPLGLB1
ClinVarPLGLB1
1000_GenomesPLGLB1 
Exome Variant ServerPLGLB1
ExAC (Exome Aggregation Consortium)PLGLB1 (select the gene name)
Genetic variants : HAPMAP5343
Genomic Variants (DGV)PLGLB1 [DGVbeta]
DECIPHERPLGLB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLGLB1 
Mutations
ICGC Data PortalPLGLB1 
TCGA Data PortalPLGLB1 
Broad Tumor PortalPLGLB1
OASIS PortalPLGLB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLGLB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLGLB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLGLB1
DgiDB (Drug Gene Interaction Database)PLGLB1
DoCM (Curated mutations)PLGLB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLGLB1 (select a term)
intoGenPLGLB1
Cancer3DPLGLB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM173340   
Orphanet
MedgenPLGLB1
Genetic Testing Registry PLGLB1
NextProtQ02325 [Medical]
TSGene5343
GENETestsPLGLB1
Target ValidationPLGLB1
Huge Navigator PLGLB1 [HugePedia]
snp3D : Map Gene to Disease5343
BioCentury BCIQPLGLB1
ClinGenPLGLB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5343
Chemical/Pharm GKB GenePA33406
Clinical trialPLGLB1
Miscellaneous
canSAR (ICR)PLGLB1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLGLB1
EVEXPLGLB1
GoPubMedPLGLB1
iHOPPLGLB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:45 CEST 2017

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