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PLGLB2 (plasminogen-like B2)

Identity

Alias_namesPLGP1
plasminogen pseudogene 1
Other alias
HGNC (Hugo) PLGLB2
LocusID (NCBI) 5342
Atlas_Id 71995
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 87010465 and ends at 87021850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLGLB2   9073
Cards
Entrez_Gene (NCBI)PLGLB2  5342  plasminogen-like B2
AliasesPLGP1
GeneCards (Weizmann)PLGLB2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:87010465-87021850 [Contig_View]  PLGLB2 [Vega]
TCGA cBioPortalPLGLB2
AceView (NCBI)PLGLB2
Genatlas (Paris)PLGLB2
WikiGenes5342
SOURCE (Princeton)PLGLB2
Genetics Home Reference (NIH)PLGLB2
Genomic and cartography
GoldenPath hg38 (UCSC)PLGLB2  -     chr2:87010465-87021850 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLGLB2  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblPLGLB2 - 2p11.2 [CytoView hg19]  PLGLB2 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIPLGLB2 [Mapview hg19]  PLGLB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075095 AI023399 AK124365 BC005379 BC022294
RefSeq transcript (Entrez)NM_002665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLGLB2
Cluster EST : UnigeneHs.652169 [ NCBI ]
CGAP (NCI)Hs.652169
Gene ExpressionPLGLB2 [ NCBI-GEO ]   PLGLB2 [ EBI - ARRAY_EXPRESS ]   PLGLB2 [ SEEK ]   PLGLB2 [ MEM ]
Gene Expression Viewer (FireBrowse)PLGLB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5342
GTEX Portal (Tissue expression)PLGLB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02325
Splice isoforms : SwissVarQ02325
PhosPhoSitePlusQ02325
Domaine pattern : Prosite (Expaxy)PAN (PS50948)   
Domains : Interpro (EBI)Pan_app    Plasminogen-rel   
Domain families : Pfam (Sanger)PAN_1 (PF00024)   
Domain families : Pfam (NCBI)pfam00024   
Domain families : Smart (EMBL)PAN_AP (SM00473)  
Conserved Domain (NCBI)PLGLB2
DMDM Disease mutations5342
Blocks (Seattle)PLGLB2
SuperfamilyQ02325
Peptide AtlasQ02325
HPRD01416
IPIIPI00651752   IPI00917054   IPI00926622   
Protein Interaction databases
DIP (DOE-UCLA)Q02325
IntAct (EBI)Q02325
BioGRIDPLGLB2
STRING (EMBL)PLGLB2
ZODIACPLGLB2
Ontologies - Pathways
QuickGOQ02325
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPLGLB2
Atlas of Cancer Signalling NetworkPLGLB2
Wikipedia pathwaysPLGLB2
Orthology - Evolution
OrthoDB5342
Phylogenetic Trees/Animal Genes : TreeFamPLGLB2
HOVERGENQ02325
HOGENOMQ02325
Homologs : HomoloGenePLGLB2
Homology/Alignments : Family Browser (UCSC)PLGLB2
Gene fusions - Rearrangements
Tumor Fusion PortalPLGLB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLGLB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLGLB2
dbVarPLGLB2
ClinVarPLGLB2
1000_GenomesPLGLB2 
Exome Variant ServerPLGLB2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP5342
Genomic Variants (DGV)PLGLB2 [DGVbeta]
DECIPHERPLGLB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLGLB2 
Mutations
ICGC Data PortalPLGLB2 
TCGA Data PortalPLGLB2 
Broad Tumor PortalPLGLB2
OASIS PortalPLGLB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLGLB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLGLB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLGLB2
DgiDB (Drug Gene Interaction Database)PLGLB2
DoCM (Curated mutations)PLGLB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLGLB2 (select a term)
intoGenPLGLB2
Cancer3DPLGLB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPLGLB2
MedgenPLGLB2
Genetic Testing Registry PLGLB2
NextProtQ02325 [Medical]
TSGene5342
GENETestsPLGLB2
Target ValidationPLGLB2
Huge Navigator PLGLB2 [HugePedia]
snp3D : Map Gene to Disease5342
BioCentury BCIQPLGLB2
ClinGenPLGLB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5342
Chemical/Pharm GKB GenePA33407
Clinical trialPLGLB2
Miscellaneous
canSAR (ICR)PLGLB2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLGLB2
EVEXPLGLB2
GoPubMedPLGLB2
iHOPPLGLB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:03 CET 2017

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