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PLGRKT (plasminogen receptor with a C-terminal lysine)

Identity

Alias_namesC9orf46
chromosome 9 open reading frame 46
plasminogen receptor, C-terminal lysine transmembrane protein
Alias_symbol (synonym)MDS030
FLJ14688
AD025
Plg-RKT
Other aliasPLG-RKT
Plg-R(KT)
HGNC (Hugo) PLGRKT
LocusID (NCBI) 55848
Atlas_Id 71996
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 5357966 and ends at 5437937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GLIS3 (9p24.2) / PLGRKT (9p24.1)RCL1 (9p24.1) / PLGRKT (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLGRKT   23633
Cards
Entrez_Gene (NCBI)PLGRKT  55848  plasminogen receptor with a C-terminal lysine
AliasesAD025; C9orf46; MDS030; PLG-RKT; 
Plg-R(KT)
GeneCards (Weizmann)PLGRKT
Ensembl hg19 (Hinxton)ENSG00000107020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107020 [Gene_View]  chr9:5357966-5437937 [Contig_View]  PLGRKT [Vega]
ICGC DataPortalENSG00000107020
TCGA cBioPortalPLGRKT
AceView (NCBI)PLGRKT
Genatlas (Paris)PLGRKT
WikiGenes55848
SOURCE (Princeton)PLGRKT
Genetics Home Reference (NIH)PLGRKT
Genomic and cartography
GoldenPath hg38 (UCSC)PLGRKT  -     chr9:5357966-5437937 -  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLGRKT  -     9p24.1   [Description]    (hg19-Feb_2009)
EnsemblPLGRKT - 9p24.1 [CytoView hg19]  PLGRKT - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIPLGRKT [Mapview hg19]  PLGRKT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA919015 AF220050 AF225420 AK027594 AK312736
RefSeq transcript (Entrez)NM_018465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLGRKT
Cluster EST : UnigeneHs.584242 [ NCBI ]
CGAP (NCI)Hs.584242
Alternative Splicing GalleryENSG00000107020
Gene ExpressionPLGRKT [ NCBI-GEO ]   PLGRKT [ EBI - ARRAY_EXPRESS ]   PLGRKT [ SEEK ]   PLGRKT [ MEM ]
Gene Expression Viewer (FireBrowse)PLGRKT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55848
GTEX Portal (Tissue expression)PLGRKT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBL7
Splice isoforms : SwissVarQ9HBL7
PhosPhoSitePlusQ9HBL7
Domains : Interpro (EBI)DUF2368   
Domain families : Pfam (Sanger)DUF2368 (PF10166)   
Domain families : Pfam (NCBI)pfam10166   
Conserved Domain (NCBI)PLGRKT
DMDM Disease mutations55848
Blocks (Seattle)PLGRKT
SuperfamilyQ9HBL7
Human Protein AtlasENSG00000107020
Peptide AtlasQ9HBL7
HPRD12961
IPIIPI00307547   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBL7
IntAct (EBI)Q9HBL7
FunCoupENSG00000107020
BioGRIDPLGRKT
STRING (EMBL)PLGRKT
ZODIACPLGRKT
Ontologies - Pathways
QuickGOQ9HBL7
Ontology : AmiGOprotein binding  mitochondrion  integral component of plasma membrane  chemotaxis  inflammatory response  positive regulation of plasminogen activation  
Ontology : EGO-EBIprotein binding  mitochondrion  integral component of plasma membrane  chemotaxis  inflammatory response  positive regulation of plasminogen activation  
NDEx NetworkPLGRKT
Atlas of Cancer Signalling NetworkPLGRKT
Wikipedia pathwaysPLGRKT
Orthology - Evolution
OrthoDB55848
GeneTree (enSembl)ENSG00000107020
Phylogenetic Trees/Animal Genes : TreeFamPLGRKT
HOVERGENQ9HBL7
HOGENOMQ9HBL7
Homologs : HomoloGenePLGRKT
Homology/Alignments : Family Browser (UCSC)PLGRKT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLGRKT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLGRKT
dbVarPLGRKT
ClinVarPLGRKT
1000_GenomesPLGRKT 
Exome Variant ServerPLGRKT
ExAC (Exome Aggregation Consortium)PLGRKT (select the gene name)
Genetic variants : HAPMAP55848
Genomic Variants (DGV)PLGRKT [DGVbeta]
DECIPHERPLGRKT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLGRKT 
Mutations
ICGC Data PortalPLGRKT 
TCGA Data PortalPLGRKT 
Broad Tumor PortalPLGRKT
OASIS PortalPLGRKT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLGRKT
BioMutasearch PLGRKT
DgiDB (Drug Gene Interaction Database)PLGRKT
DoCM (Curated mutations)PLGRKT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLGRKT (select a term)
intoGenPLGRKT
Cancer3DPLGRKT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLGRKT
Genetic Testing Registry PLGRKT
NextProtQ9HBL7 [Medical]
TSGene55848
GENETestsPLGRKT
Target ValidationPLGRKT
Huge Navigator PLGRKT [HugePedia]
snp3D : Map Gene to Disease55848
BioCentury BCIQPLGRKT
ClinGenPLGRKT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55848
Chemical/Pharm GKB GenePA134964114
Clinical trialPLGRKT
Miscellaneous
canSAR (ICR)PLGRKT (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLGRKT
EVEXPLGRKT
GoPubMedPLGRKT
iHOPPLGRKT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:46 CEST 2017

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