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PLIN1 (perilipin 1)

Identity

Alias_namesPLIN
perilipin
Other aliasFPLD4
PERI
HGNC (Hugo) PLIN1
LocusID (NCBI) 5346
Atlas_Id 53570
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90207600 and ends at 90222648 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PLIN1 (15q26.1) / ACSL6 (5q31.1)PLIN1 15q26.1 / ACSL6 5q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLIN1   9076
Cards
Entrez_Gene (NCBI)PLIN1  5346  perilipin 1
AliasesFPLD4; PERI; PLIN
GeneCards (Weizmann)PLIN1
Ensembl hg19 (Hinxton)ENSG00000166819 [Gene_View]  chr15:90207600-90222648 [Contig_View]  PLIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166819 [Gene_View]  chr15:90207600-90222648 [Contig_View]  PLIN1 [Vega]
ICGC DataPortalENSG00000166819
TCGA cBioPortalPLIN1
AceView (NCBI)PLIN1
Genatlas (Paris)PLIN1
WikiGenes5346
SOURCE (Princeton)PLIN1
Genetics Home Reference (NIH)PLIN1
Genomic and cartography
GoldenPath hg19 (UCSC)PLIN1  -     chr15:90207600-90222648 -  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLIN1  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblPLIN1 - 15q26.1 [CytoView hg19]  PLIN1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIPLIN1 [Mapview hg19]  PLIN1 [Mapview hg38]
OMIM170290   613877   
Gene and transcription
Genbank (Entrez)AB005293 AK310907 BC031084 BQ003487 CA427560
RefSeq transcript (Entrez)NM_001145311 NM_002666
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_029172 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)PLIN1
Cluster EST : UnigeneHs.103253 [ NCBI ]
CGAP (NCI)Hs.103253
Alternative Splicing GalleryENSG00000166819
Gene ExpressionPLIN1 [ NCBI-GEO ]   PLIN1 [ EBI - ARRAY_EXPRESS ]   PLIN1 [ SEEK ]   PLIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5346
GTEX Portal (Tissue expression)PLIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60240   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60240  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60240
Splice isoforms : SwissVarO60240
PhosPhoSitePlusO60240
Domains : Interpro (EBI)Perilipin   
Domain families : Pfam (Sanger)Perilipin (PF03036)   
Domain families : Pfam (NCBI)pfam03036   
Conserved Domain (NCBI)PLIN1
DMDM Disease mutations5346
Blocks (Seattle)PLIN1
SuperfamilyO60240
Human Protein AtlasENSG00000166819
Peptide AtlasO60240
HPRD01364
IPIIPI00028444   
Protein Interaction databases
DIP (DOE-UCLA)O60240
IntAct (EBI)O60240
FunCoupENSG00000166819
BioGRIDPLIN1
STRING (EMBL)PLIN1
ZODIACPLIN1
Ontologies - Pathways
QuickGOO60240
Ontology : AmiGOendoplasmic reticulum  lipid particle  lipid particle  lipid metabolic process  lipid binding  
Ontology : EGO-EBIendoplasmic reticulum  lipid particle  lipid particle  lipid metabolic process  lipid binding  
Pathways : KEGGPPAR signaling pathway   
NDEx NetworkPLIN1
Atlas of Cancer Signalling NetworkPLIN1
Wikipedia pathwaysPLIN1
Orthology - Evolution
OrthoDB5346
GeneTree (enSembl)ENSG00000166819
Phylogenetic Trees/Animal Genes : TreeFamPLIN1
HOVERGENO60240
HOGENOMO60240
Homologs : HomoloGenePLIN1
Homology/Alignments : Family Browser (UCSC)PLIN1
Gene fusions - Rearrangements
Fusion : MitelmanPLIN1/ACSL6 [15q26.1/5q31.1]  
Fusion: TCGAPLIN1 15q26.1 ACSL6 5q31.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLIN1
dbVarPLIN1
ClinVarPLIN1
1000_GenomesPLIN1 
Exome Variant ServerPLIN1
ExAC (Exome Aggregation Consortium)PLIN1 (select the gene name)
Genetic variants : HAPMAP5346
Genomic Variants (DGV)PLIN1 [DGVbeta]
DECIPHER (Syndromes)15:90207600-90222648  ENSG00000166819
CONAN: Copy Number AnalysisPLIN1 
Mutations
ICGC Data PortalPLIN1 
TCGA Data PortalPLIN1 
Broad Tumor PortalPLIN1
OASIS PortalPLIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLIN1
DgiDB (Drug Gene Interaction Database)PLIN1
DoCM (Curated mutations)PLIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLIN1 (select a term)
intoGenPLIN1
Cancer3DPLIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM170290    613877   
Orphanet20458   
MedgenPLIN1
Genetic Testing Registry PLIN1
NextProtO60240 [Medical]
TSGene5346
GENETestsPLIN1
Huge Navigator PLIN1 [HugePedia]
snp3D : Map Gene to Disease5346
BioCentury BCIQPLIN1
ClinGenPLIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5346
Chemical/Pharm GKB GenePA33409
Clinical trialPLIN1
Miscellaneous
canSAR (ICR)PLIN1 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLIN1
EVEXPLIN1
GoPubMedPLIN1
iHOPPLIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:21:49 CET 2017

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