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PLIN3 (perilipin 3)

Identity

Alias_namesM6PRBP1
mannose-6-phosphate receptor binding protein 1
Alias_symbol (synonym)TIP47
PP17
Other alias
HGNC (Hugo) PLIN3
LocusID (NCBI) 10226
Atlas_Id 42938
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4838346 and ends at 4867780 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
API5 (11p12) / PLIN3 (19p13.3)ATPAF1 (1p33) / PLIN3 (19p13.3)FAU (11q13.1) / PLIN3 (19p13.3)
LOC100507412 (-) / PLIN3 (19p13.3)PLIN3 (19p13.3) / ARRDC5 (19p13.3)PLIN3 (19p13.3) / DUSP5 (10q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLIN3   16893
Cards
Entrez_Gene (NCBI)PLIN3  10226  perilipin 3
AliasesM6PRBP1; PP17; TIP47
GeneCards (Weizmann)PLIN3
Ensembl hg19 (Hinxton)ENSG00000105355 [Gene_View]  chr19:4838346-4867780 [Contig_View]  PLIN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105355 [Gene_View]  chr19:4838346-4867780 [Contig_View]  PLIN3 [Vega]
ICGC DataPortalENSG00000105355
TCGA cBioPortalPLIN3
AceView (NCBI)PLIN3
Genatlas (Paris)PLIN3
WikiGenes10226
SOURCE (Princeton)PLIN3
Genetics Home Reference (NIH)PLIN3
Genomic and cartography
GoldenPath hg19 (UCSC)PLIN3  -     chr19:4838346-4867780 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLIN3  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblPLIN3 - 19p13.3 [CytoView hg19]  PLIN3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPLIN3 [Mapview hg19]  PLIN3 [Mapview hg38]
OMIM602702   
Gene and transcription
Genbank (Entrez)AF051314 AF051315 AF055574 AF057140 AK122671
RefSeq transcript (Entrez)NM_001164189 NM_001164194 NM_005817
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_028080 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)PLIN3
Cluster EST : UnigeneHs.140452 [ NCBI ]
CGAP (NCI)Hs.140452
Alternative Splicing GalleryENSG00000105355
Gene ExpressionPLIN3 [ NCBI-GEO ]   PLIN3 [ EBI - ARRAY_EXPRESS ]   PLIN3 [ SEEK ]   PLIN3 [ MEM ]
Gene Expression Viewer (FireBrowse)PLIN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10226
GTEX Portal (Tissue expression)PLIN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60664   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60664  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60664
Splice isoforms : SwissVarO60664
PhosPhoSitePlusO60664
Domains : Interpro (EBI)Perilipin   
Domain families : Pfam (Sanger)Perilipin (PF03036)   
Domain families : Pfam (NCBI)pfam03036   
Conserved Domain (NCBI)PLIN3
DMDM Disease mutations10226
Blocks (Seattle)PLIN3
SuperfamilyO60664
Human Protein AtlasENSG00000105355
Peptide AtlasO60664
HPRD04080
IPIIPI00303882   IPI00943550   IPI00106668   
Protein Interaction databases
DIP (DOE-UCLA)O60664
IntAct (EBI)O60664
FunCoupENSG00000105355
BioGRIDPLIN3
STRING (EMBL)PLIN3
ZODIACPLIN3
Ontologies - Pathways
QuickGOO60664
Ontology : AmiGOprotein binding  cytoplasm  endosome  Golgi apparatus  lipid particle  cytosol  endosome membrane  membrane  vesicle-mediated transport  transport vesicle  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  cytoplasm  endosome  Golgi apparatus  lipid particle  cytosol  endosome membrane  membrane  vesicle-mediated transport  transport vesicle  intracellular membrane-bounded organelle  
NDEx NetworkPLIN3
Atlas of Cancer Signalling NetworkPLIN3
Wikipedia pathwaysPLIN3
Orthology - Evolution
OrthoDB10226
GeneTree (enSembl)ENSG00000105355
Phylogenetic Trees/Animal Genes : TreeFamPLIN3
HOVERGENO60664
HOGENOMO60664
Homologs : HomoloGenePLIN3
Homology/Alignments : Family Browser (UCSC)PLIN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLIN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLIN3
dbVarPLIN3
ClinVarPLIN3
1000_GenomesPLIN3 
Exome Variant ServerPLIN3
ExAC (Exome Aggregation Consortium)PLIN3 (select the gene name)
Genetic variants : HAPMAP10226
Genomic Variants (DGV)PLIN3 [DGVbeta]
DECIPHER (Syndromes)19:4838346-4867780  ENSG00000105355
CONAN: Copy Number AnalysisPLIN3 
Mutations
ICGC Data PortalPLIN3 
TCGA Data PortalPLIN3 
Broad Tumor PortalPLIN3
OASIS PortalPLIN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLIN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLIN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLIN3
DgiDB (Drug Gene Interaction Database)PLIN3
DoCM (Curated mutations)PLIN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLIN3 (select a term)
intoGenPLIN3
Cancer3DPLIN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602702   
Orphanet
MedgenPLIN3
Genetic Testing Registry PLIN3
NextProtO60664 [Medical]
TSGene10226
GENETestsPLIN3
Huge Navigator PLIN3 [HugePedia]
snp3D : Map Gene to Disease10226
BioCentury BCIQPLIN3
ClinGenPLIN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10226
Chemical/Pharm GKB GenePA165394001
Clinical trialPLIN3
Miscellaneous
canSAR (ICR)PLIN3 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLIN3
EVEXPLIN3
GoPubMedPLIN3
iHOPPLIN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:43 CEST 2017

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