Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PLIN5 (perilipin 5)

Identity

Alias_symbol (synonym)LSDP5
LSDA5
OXPAT
MLDP
Other alias
HGNC (Hugo) PLIN5
LocusID (NCBI) 440503
Atlas_Id 71998
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4522531 and ends at 4535196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLIN5   33196
Cards
Entrez_Gene (NCBI)PLIN5  440503  perilipin 5
AliasesLSDA5; LSDP5; MLDP; OXPAT
GeneCards (Weizmann)PLIN5
Ensembl hg19 (Hinxton)ENSG00000214456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214456 [Gene_View]  chr19:4522531-4535196 [Contig_View]  PLIN5 [Vega]
ICGC DataPortalENSG00000214456
TCGA cBioPortalPLIN5
AceView (NCBI)PLIN5
Genatlas (Paris)PLIN5
WikiGenes440503
SOURCE (Princeton)PLIN5
Genetics Home Reference (NIH)PLIN5
Genomic and cartography
GoldenPath hg38 (UCSC)PLIN5  -     chr19:4522531-4535196 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLIN5  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblPLIN5 - 19p13.3 [CytoView hg19]  PLIN5 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPLIN5 [Mapview hg19]  PLIN5 [Mapview hg38]
OMIM613248   
Gene and transcription
Genbank (Entrez)AW445065 BC033570 BC131524 BX105717 DQ839131
RefSeq transcript (Entrez)NM_001013706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLIN5
Cluster EST : UnigeneHs.131034 [ NCBI ]
CGAP (NCI)Hs.131034
Alternative Splicing GalleryENSG00000214456
Gene ExpressionPLIN5 [ NCBI-GEO ]   PLIN5 [ EBI - ARRAY_EXPRESS ]   PLIN5 [ SEEK ]   PLIN5 [ MEM ]
Gene Expression Viewer (FireBrowse)PLIN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440503
GTEX Portal (Tissue expression)PLIN5
Human Protein AtlasENSG00000214456-PLIN5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00G26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00G26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00G26
Splice isoforms : SwissVarQ00G26
PhosPhoSitePlusQ00G26
Domains : Interpro (EBI)Perilipin   
Domain families : Pfam (Sanger)Perilipin (PF03036)   
Domain families : Pfam (NCBI)pfam03036   
Conserved Domain (NCBI)PLIN5
DMDM Disease mutations440503
Blocks (Seattle)PLIN5
SuperfamilyQ00G26
Human Protein Atlas [tissue]ENSG00000214456-PLIN5 [tissue]
Peptide AtlasQ00G26
IPIIPI00444179   IPI00830070   
Protein Interaction databases
DIP (DOE-UCLA)Q00G26
IntAct (EBI)Q00G26
FunCoupENSG00000214456
BioGRIDPLIN5
STRING (EMBL)PLIN5
ZODIACPLIN5
Ontologies - Pathways
QuickGOQ00G26
Ontology : AmiGOcytoplasm  mitochondrion  lipid particle  cytosol  positive regulation of triglyceride biosynthetic process  positive regulation of lipid storage  positive regulation of sequestering of triglyceride  negative regulation of triglyceride catabolic process  lipid storage  negative regulation of fatty acid beta-oxidation  positive regulation of fatty acid beta-oxidation  lipid particle organization  negative regulation of peroxisome proliferator activated receptor signaling pathway  lipase binding  identical protein binding  mitochondrion localization  negative regulation of lipase activity  positive regulation of lipase activity  negative regulation of reactive oxygen species metabolic process  
Ontology : EGO-EBIcytoplasm  mitochondrion  lipid particle  cytosol  positive regulation of triglyceride biosynthetic process  positive regulation of lipid storage  positive regulation of sequestering of triglyceride  negative regulation of triglyceride catabolic process  lipid storage  negative regulation of fatty acid beta-oxidation  positive regulation of fatty acid beta-oxidation  lipid particle organization  negative regulation of peroxisome proliferator activated receptor signaling pathway  lipase binding  identical protein binding  mitochondrion localization  negative regulation of lipase activity  positive regulation of lipase activity  negative regulation of reactive oxygen species metabolic process  
NDEx NetworkPLIN5
Atlas of Cancer Signalling NetworkPLIN5
Wikipedia pathwaysPLIN5
Orthology - Evolution
OrthoDB440503
GeneTree (enSembl)ENSG00000214456
Phylogenetic Trees/Animal Genes : TreeFamPLIN5
HOVERGENQ00G26
HOGENOMQ00G26
Homologs : HomoloGenePLIN5
Homology/Alignments : Family Browser (UCSC)PLIN5
Gene fusions - Rearrangements
Tumor Fusion PortalPLIN5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLIN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLIN5
dbVarPLIN5
ClinVarPLIN5
1000_GenomesPLIN5 
Exome Variant ServerPLIN5
ExAC (Exome Aggregation Consortium)ENSG00000214456
GNOMAD BrowserENSG00000214456
Genetic variants : HAPMAP440503
Genomic Variants (DGV)PLIN5 [DGVbeta]
DECIPHERPLIN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLIN5 
Mutations
ICGC Data PortalPLIN5 
TCGA Data PortalPLIN5 
Broad Tumor PortalPLIN5
OASIS PortalPLIN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLIN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLIN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLIN5
DgiDB (Drug Gene Interaction Database)PLIN5
DoCM (Curated mutations)PLIN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLIN5 (select a term)
intoGenPLIN5
Cancer3DPLIN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613248   
Orphanet
DisGeNETPLIN5
MedgenPLIN5
Genetic Testing Registry PLIN5
NextProtQ00G26 [Medical]
TSGene440503
GENETestsPLIN5
Target ValidationPLIN5
Huge Navigator PLIN5 [HugePedia]
snp3D : Map Gene to Disease440503
BioCentury BCIQPLIN5
ClinGenPLIN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440503
Chemical/Pharm GKB GenePA165394043
Clinical trialPLIN5
Miscellaneous
canSAR (ICR)PLIN5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLIN5
EVEXPLIN5
GoPubMedPLIN5
iHOPPLIN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:38 CET 2017

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