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PLPP6 (phospholipid phosphatase 6)

Identity

Alias_namesPPAPDC2
phosphatidic acid phosphatase type 2 domain containing 2
Alias_symbol (synonym)FLJ90191
FLJ46512
PDP1
Other aliasPSDP
bA6J24.6
HGNC (Hugo) PLPP6
LocusID (NCBI) 403313
Atlas_Id 77950
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 4662294 and ends at 4665272 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLPP6   23682
Cards
Entrez_Gene (NCBI)PLPP6  403313  phospholipid phosphatase 6
AliasesPDP1; PPAPDC2; PSDP; bA6J24.6
GeneCards (Weizmann)PLPP6
Ensembl hg19 (Hinxton)ENSG00000205808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205808 [Gene_View]  chr9:4662294-4665272 [Contig_View]  PLPP6 [Vega]
ICGC DataPortalENSG00000205808
TCGA cBioPortalPLPP6
AceView (NCBI)PLPP6
Genatlas (Paris)PLPP6
WikiGenes403313
SOURCE (Princeton)PLPP6
Genetics Home Reference (NIH)PLPP6
Genomic and cartography
GoldenPath hg38 (UCSC)PLPP6  -     chr9:4662294-4665272 +  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLPP6  -     9p24.1   [Description]    (hg19-Feb_2009)
EnsemblPLPP6 - 9p24.1 [CytoView hg19]  PLPP6 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIPLPP6 [Mapview hg19]  PLPP6 [Mapview hg38]
OMIM611666   
Gene and transcription
Genbank (Entrez)AK074672 AK128369 AK296773 BC036833 BC038108
RefSeq transcript (Entrez)NM_203453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLPP6
Cluster EST : UnigeneHs.741406 [ NCBI ]
CGAP (NCI)Hs.741406
Alternative Splicing GalleryENSG00000205808
Gene ExpressionPLPP6 [ NCBI-GEO ]   PLPP6 [ EBI - ARRAY_EXPRESS ]   PLPP6 [ SEEK ]   PLPP6 [ MEM ]
Gene Expression Viewer (FireBrowse)PLPP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)403313
GTEX Portal (Tissue expression)PLPP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY26
Splice isoforms : SwissVarQ8IY26
Catalytic activity : Enzyme3.1.3.- [ Enzyme-Expasy ]   3.1.3.-3.1.3.- [ IntEnz-EBI ]   3.1.3.- [ BRENDA ]   3.1.3.- [ KEGG ]   
PhosPhoSitePlusQ8IY26
Domains : Interpro (EBI)P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PLPP6
DMDM Disease mutations403313
Blocks (Seattle)PLPP6
SuperfamilyQ8IY26
Human Protein AtlasENSG00000205808
Peptide AtlasQ8IY26
HPRD17397
IPIIPI00647930   IPI01009854   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY26
IntAct (EBI)Q8IY26
FunCoupENSG00000205808
BioGRIDPLPP6
STRING (EMBL)PLPP6
ZODIACPLPP6
Ontologies - Pathways
QuickGOQ8IY26
Ontology : AmiGOintegral component of membrane  hydrolase activity  
Ontology : EGO-EBIintegral component of membrane  hydrolase activity  
NDEx NetworkPLPP6
Atlas of Cancer Signalling NetworkPLPP6
Wikipedia pathwaysPLPP6
Orthology - Evolution
OrthoDB403313
GeneTree (enSembl)ENSG00000205808
Phylogenetic Trees/Animal Genes : TreeFamPLPP6
HOVERGENQ8IY26
HOGENOMQ8IY26
Homologs : HomoloGenePLPP6
Homology/Alignments : Family Browser (UCSC)PLPP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLPP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLPP6
dbVarPLPP6
ClinVarPLPP6
1000_GenomesPLPP6 
Exome Variant ServerPLPP6
ExAC (Exome Aggregation Consortium)PLPP6 (select the gene name)
Genetic variants : HAPMAP403313
Genomic Variants (DGV)PLPP6 [DGVbeta]
DECIPHERPLPP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLPP6 
Mutations
ICGC Data PortalPLPP6 
TCGA Data PortalPLPP6 
Broad Tumor PortalPLPP6
OASIS PortalPLPP6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLPP6
BioMutasearch PLPP6
DgiDB (Drug Gene Interaction Database)PLPP6
DoCM (Curated mutations)PLPP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLPP6 (select a term)
intoGenPLPP6
Cancer3DPLPP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611666   
Orphanet
MedgenPLPP6
Genetic Testing Registry PLPP6
NextProtQ8IY26 [Medical]
TSGene403313
GENETestsPLPP6
Target ValidationPLPP6
Huge Navigator PLPP6 [HugePedia]
snp3D : Map Gene to Disease403313
BioCentury BCIQPLPP6
ClinGenPLPP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD403313
Chemical/Pharm GKB GenePA142671155
Clinical trialPLPP6
Miscellaneous
canSAR (ICR)PLPP6 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLPP6
EVEXPLPP6
GoPubMedPLPP6
iHOPPLPP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:47 CEST 2017

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