Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PLPPR1 (phospholipid phosphatase related 1)

Identity

Alias_symbol (synonym)PRG-3
MGC26189
FLJ20300
LPPR1
Other alias
HGNC (Hugo) PLPPR1
LocusID (NCBI) 54886
Atlas_Id 77952
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101185035 and ends at 101325135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLPPR1   25993
Cards
Entrez_Gene (NCBI)PLPPR1  54886  phospholipid phosphatase related 1
AliasesLPPR1; PRG-3
GeneCards (Weizmann)PLPPR1
Ensembl hg19 (Hinxton)ENSG00000148123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148123 [Gene_View]  chr9:101185035-101325135 [Contig_View]  PLPPR1 [Vega]
ICGC DataPortalENSG00000148123
TCGA cBioPortalPLPPR1
AceView (NCBI)PLPPR1
Genatlas (Paris)PLPPR1
WikiGenes54886
SOURCE (Princeton)PLPPR1
Genetics Home Reference (NIH)PLPPR1
Genomic and cartography
GoldenPath hg38 (UCSC)PLPPR1  -     chr9:101185035-101325135 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLPPR1  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblPLPPR1 - 9q31.1 [CytoView hg19]  PLPPR1 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIPLPPR1 [Mapview hg19]  PLPPR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000307 AK225306 AK303718 AK303807 AK309115
RefSeq transcript (Entrez)NM_017753 NM_207299
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_187578
Consensus coding sequences : CCDS (NCBI)PLPPR1
Cluster EST : UnigeneHs.382683 [ NCBI ]
CGAP (NCI)Hs.382683
Alternative Splicing GalleryENSG00000148123
Gene ExpressionPLPPR1 [ NCBI-GEO ]   PLPPR1 [ EBI - ARRAY_EXPRESS ]   PLPPR1 [ SEEK ]   PLPPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PLPPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54886
GTEX Portal (Tissue expression)PLPPR1
Human Protein AtlasENSG00000148123-PLPPR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBJ4
Splice isoforms : SwissVarQ8TBJ4
PhosPhoSitePlusQ8TBJ4
Domains : Interpro (EBI)LPPR1    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PLPPR1
DMDM Disease mutations54886
Blocks (Seattle)PLPPR1
SuperfamilyQ8TBJ4
Human Protein Atlas [tissue]ENSG00000148123-PLPPR1 [tissue]
Peptide AtlasQ8TBJ4
HPRD17906
IPIIPI00290773   IPI00647853   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBJ4
IntAct (EBI)Q8TBJ4
FunCoupENSG00000148123
BioGRIDPLPPR1
STRING (EMBL)PLPPR1
ZODIACPLPPR1
Ontologies - Pathways
QuickGOQ8TBJ4
Ontology : AmiGOnucleoplasm  integral component of plasma membrane  phospholipid metabolic process  signal transduction  nervous system development  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  
Ontology : EGO-EBInucleoplasm  integral component of plasma membrane  phospholipid metabolic process  signal transduction  nervous system development  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  
NDEx NetworkPLPPR1
Atlas of Cancer Signalling NetworkPLPPR1
Wikipedia pathwaysPLPPR1
Orthology - Evolution
OrthoDB54886
GeneTree (enSembl)ENSG00000148123
Phylogenetic Trees/Animal Genes : TreeFamPLPPR1
HOVERGENQ8TBJ4
HOGENOMQ8TBJ4
Homologs : HomoloGenePLPPR1
Homology/Alignments : Family Browser (UCSC)PLPPR1
Gene fusions - Rearrangements
Tumor Fusion PortalPLPPR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLPPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLPPR1
dbVarPLPPR1
ClinVarPLPPR1
1000_GenomesPLPPR1 
Exome Variant ServerPLPPR1
ExAC (Exome Aggregation Consortium)ENSG00000148123
GNOMAD BrowserENSG00000148123
Genetic variants : HAPMAP54886
Genomic Variants (DGV)PLPPR1 [DGVbeta]
DECIPHERPLPPR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLPPR1 
Mutations
ICGC Data PortalPLPPR1 
TCGA Data PortalPLPPR1 
Broad Tumor PortalPLPPR1
OASIS PortalPLPPR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLPPR1
BioMutasearch PLPPR1
DgiDB (Drug Gene Interaction Database)PLPPR1
DoCM (Curated mutations)PLPPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLPPR1 (select a term)
intoGenPLPPR1
Cancer3DPLPPR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPLPPR1
MedgenPLPPR1
Genetic Testing Registry PLPPR1
NextProtQ8TBJ4 [Medical]
TSGene54886
GENETestsPLPPR1
Target ValidationPLPPR1
Huge Navigator PLPPR1 [HugePedia]
snp3D : Map Gene to Disease54886
BioCentury BCIQPLPPR1
ClinGenPLPPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54886
Clinical trialPLPPR1
Miscellaneous
canSAR (ICR)PLPPR1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLPPR1
EVEXPLPPR1
GoPubMedPLPPR1
iHOPPLPPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:07:32 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.