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PLPPR3 (phospholipid phosphatase related 3)

Identity

Alias_symbol (synonym)PRG-2
FLJ11535
LPPR3
PRG2
Other aliasLPR3
HGNC (Hugo) PLPPR3
LocusID (NCBI) 79948
Atlas_Id 77954
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 812488 and ends at 821952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLPPR3   23497
Cards
Entrez_Gene (NCBI)PLPPR3  79948  phospholipid phosphatase related 3
AliasesLPPR3; LPR3; PRG-2; PRG2
GeneCards (Weizmann)PLPPR3
Ensembl hg19 (Hinxton)ENSG00000129951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129951 [Gene_View]  chr19:812488-821952 [Contig_View]  PLPPR3 [Vega]
ICGC DataPortalENSG00000129951
TCGA cBioPortalPLPPR3
AceView (NCBI)PLPPR3
Genatlas (Paris)PLPPR3
WikiGenes79948
SOURCE (Princeton)PLPPR3
Genetics Home Reference (NIH)PLPPR3
Genomic and cartography
GoldenPath hg38 (UCSC)PLPPR3  -     chr19:812488-821952 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLPPR3  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblPLPPR3 - 19p13.3 [CytoView hg19]  PLPPR3 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPLPPR3 [Mapview hg19]  PLPPR3 [Mapview hg38]
OMIM610391   
Gene and transcription
Genbank (Entrez)AF357888 AF541282 AK021597 AL136596 AY304517
RefSeq transcript (Entrez)NM_001270366 NM_024888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLPPR3
Cluster EST : UnigeneHs.745399 [ NCBI ]
CGAP (NCI)Hs.745399
Alternative Splicing GalleryENSG00000129951
Gene ExpressionPLPPR3 [ NCBI-GEO ]   PLPPR3 [ EBI - ARRAY_EXPRESS ]   PLPPR3 [ SEEK ]   PLPPR3 [ MEM ]
Gene Expression Viewer (FireBrowse)PLPPR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79948
GTEX Portal (Tissue expression)PLPPR3
Human Protein AtlasENSG00000129951-PLPPR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6T4P5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6T4P5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6T4P5
Splice isoforms : SwissVarQ6T4P5
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ6T4P5
Domains : Interpro (EBI)LPPR3    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PLPPR3
DMDM Disease mutations79948
Blocks (Seattle)PLPPR3
SuperfamilyQ6T4P5
Human Protein Atlas [tissue]ENSG00000129951-PLPPR3 [tissue]
Peptide AtlasQ6T4P5
HPRD07755
IPIIPI00885019   IPI00016464   IPI00884989   IPI00419236   IPI00982942   IPI00974325   
Protein Interaction databases
DIP (DOE-UCLA)Q6T4P5
IntAct (EBI)Q6T4P5
FunCoupENSG00000129951
BioGRIDPLPPR3
STRING (EMBL)PLPPR3
ZODIACPLPPR3
Ontologies - Pathways
QuickGOQ6T4P5
Ontology : AmiGOintegral component of plasma membrane  phospholipid metabolic process  signal transduction  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  
Ontology : EGO-EBIintegral component of plasma membrane  phospholipid metabolic process  signal transduction  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  
NDEx NetworkPLPPR3
Atlas of Cancer Signalling NetworkPLPPR3
Wikipedia pathwaysPLPPR3
Orthology - Evolution
OrthoDB79948
GeneTree (enSembl)ENSG00000129951
Phylogenetic Trees/Animal Genes : TreeFamPLPPR3
HOVERGENQ6T4P5
HOGENOMQ6T4P5
Homologs : HomoloGenePLPPR3
Homology/Alignments : Family Browser (UCSC)PLPPR3
Gene fusions - Rearrangements
Fusion: Tumor Portal PLPPR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLPPR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLPPR3
dbVarPLPPR3
ClinVarPLPPR3
1000_GenomesPLPPR3 
Exome Variant ServerPLPPR3
ExAC (Exome Aggregation Consortium)ENSG00000129951
GNOMAD BrowserENSG00000129951
Genetic variants : HAPMAP79948
Genomic Variants (DGV)PLPPR3 [DGVbeta]
DECIPHERPLPPR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLPPR3 
Mutations
ICGC Data PortalPLPPR3 
TCGA Data PortalPLPPR3 
Broad Tumor PortalPLPPR3
OASIS PortalPLPPR3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLPPR3
BioMutasearch PLPPR3
DgiDB (Drug Gene Interaction Database)PLPPR3
DoCM (Curated mutations)PLPPR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLPPR3 (select a term)
intoGenPLPPR3
Cancer3DPLPPR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610391   
Orphanet
MedgenPLPPR3
Genetic Testing Registry PLPPR3
NextProtQ6T4P5 [Medical]
TSGene79948
GENETestsPLPPR3
Target ValidationPLPPR3
Huge Navigator PLPPR3 [HugePedia]
snp3D : Map Gene to Disease79948
BioCentury BCIQPLPPR3
ClinGenPLPPR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79948
Clinical trialPLPPR3
Miscellaneous
canSAR (ICR)PLPPR3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLPPR3
EVEXPLPPR3
GoPubMedPLPPR3
iHOPPLPPR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:22:53 CET 2017

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