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PLPPR4 (phospholipid phosphatase related 4)

Identity

Alias_symbol (synonym)PRG-1
LPPR4
KIAA0455
PHP1
Other aliasLPR4
PRG1
HGNC (Hugo) PLPPR4
LocusID (NCBI) 9890
Atlas_Id 77955
Location 1p21.3  [Link to chromosome band 1p21]
Location_base_pair Starts at 99264292 and ends at 99309582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLPPR4 (1p21.2) / REPIN1 (7q36.1)PLPPR4 (1p21.2) / SENP2 (3q27.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLPPR4   23496
Cards
Entrez_Gene (NCBI)PLPPR4  9890  phospholipid phosphatase related 4
AliasesLPPR4; LPR4; PHP1; PRG-1; 
PRG1
GeneCards (Weizmann)PLPPR4
Ensembl hg19 (Hinxton)ENSG00000117600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117600 [Gene_View]  chr1:99264292-99309582 [Contig_View]  PLPPR4 [Vega]
ICGC DataPortalENSG00000117600
TCGA cBioPortalPLPPR4
AceView (NCBI)PLPPR4
Genatlas (Paris)PLPPR4
WikiGenes9890
SOURCE (Princeton)PLPPR4
Genetics Home Reference (NIH)PLPPR4
Genomic and cartography
GoldenPath hg38 (UCSC)PLPPR4  -     chr1:99264292-99309582 +  1p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLPPR4  -     1p21.3   [Description]    (hg19-Feb_2009)
EnsemblPLPPR4 - 1p21.3 [CytoView hg19]  PLPPR4 - 1p21.3 [CytoView hg38]
Mapping of homologs : NCBIPLPPR4 [Mapview hg19]  PLPPR4 [Mapview hg38]
OMIM607813   
Gene and transcription
Genbank (Entrez)AB007924 AF357013 AF541281 AK291369 AK300361
RefSeq transcript (Entrez)NM_001166252 NM_014839
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLPPR4
Cluster EST : UnigeneHs.13245 [ NCBI ]
CGAP (NCI)Hs.13245
Alternative Splicing GalleryENSG00000117600
Gene ExpressionPLPPR4 [ NCBI-GEO ]   PLPPR4 [ EBI - ARRAY_EXPRESS ]   PLPPR4 [ SEEK ]   PLPPR4 [ MEM ]
Gene Expression Viewer (FireBrowse)PLPPR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9890
GTEX Portal (Tissue expression)PLPPR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2D5
Splice isoforms : SwissVarQ7Z2D5
Catalytic activity : Enzyme3.1.3.4 [ Enzyme-Expasy ]   3.1.3.43.1.3.4 [ IntEnz-EBI ]   3.1.3.4 [ BRENDA ]   3.1.3.4 [ KEGG ]   
PhosPhoSitePlusQ7Z2D5
Domains : Interpro (EBI)LPPR4    P_Acid_Pase_2/haloperoxidase   
Domain families : Pfam (Sanger)PAP2 (PF01569)   
Domain families : Pfam (NCBI)pfam01569   
Domain families : Smart (EMBL)acidPPc (SM00014)  
Conserved Domain (NCBI)PLPPR4
DMDM Disease mutations9890
Blocks (Seattle)PLPPR4
SuperfamilyQ7Z2D5
Human Protein AtlasENSG00000117600
Peptide AtlasQ7Z2D5
HPRD07425
IPIIPI00337643   IPI00844586   IPI00640138   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2D5
IntAct (EBI)Q7Z2D5
FunCoupENSG00000117600
BioGRIDPLPPR4
STRING (EMBL)PLPPR4
ZODIACPLPPR4
Ontologies - Pathways
QuickGOQ7Z2D5
Ontology : AmiGOplasma membrane  integral component of plasma membrane  phospholipid metabolic process  signal transduction  axonogenesis  phosphatidate phosphatase activity  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  inner ear development  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  phospholipid metabolic process  signal transduction  axonogenesis  phosphatidate phosphatase activity  phosphatidate phosphatase activity  lipid phosphatase activity  phospholipid dephosphorylation  inner ear development  
NDEx NetworkPLPPR4
Atlas of Cancer Signalling NetworkPLPPR4
Wikipedia pathwaysPLPPR4
Orthology - Evolution
OrthoDB9890
GeneTree (enSembl)ENSG00000117600
Phylogenetic Trees/Animal Genes : TreeFamPLPPR4
HOVERGENQ7Z2D5
HOGENOMQ7Z2D5
Homologs : HomoloGenePLPPR4
Homology/Alignments : Family Browser (UCSC)PLPPR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLPPR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLPPR4
dbVarPLPPR4
ClinVarPLPPR4
1000_GenomesPLPPR4 
Exome Variant ServerPLPPR4
ExAC (Exome Aggregation Consortium)PLPPR4 (select the gene name)
Genetic variants : HAPMAP9890
Genomic Variants (DGV)PLPPR4 [DGVbeta]
DECIPHERPLPPR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLPPR4 
Mutations
ICGC Data PortalPLPPR4 
TCGA Data PortalPLPPR4 
Broad Tumor PortalPLPPR4
OASIS PortalPLPPR4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPLPPR4
BioMutasearch PLPPR4
DgiDB (Drug Gene Interaction Database)PLPPR4
DoCM (Curated mutations)PLPPR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLPPR4 (select a term)
intoGenPLPPR4
Cancer3DPLPPR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607813   
Orphanet
MedgenPLPPR4
Genetic Testing Registry PLPPR4
NextProtQ7Z2D5 [Medical]
TSGene9890
GENETestsPLPPR4
Target ValidationPLPPR4
Huge Navigator PLPPR4 [HugePedia]
snp3D : Map Gene to Disease9890
BioCentury BCIQPLPPR4
ClinGenPLPPR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9890
Clinical trialPLPPR4
Miscellaneous
canSAR (ICR)PLPPR4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLPPR4
EVEXPLPPR4
GoPubMedPLPPR4
iHOPPLPPR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:47 CEST 2017

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