Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PLSCR2 (phospholipid scramblase 2)

Identity

Other alias-
HGNC (Hugo) PLSCR2
LocusID (NCBI) 57047
Atlas_Id 72006
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 146433288 and ends at 146469301 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLSCR2 (3q24) / PLSCR1 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLSCR2   16494
Cards
Entrez_Gene (NCBI)PLSCR2  57047  phospholipid scramblase 2
Aliases
GeneCards (Weizmann)PLSCR2
Ensembl hg19 (Hinxton)ENSG00000163746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163746 [Gene_View]  chr3:146433288-146469301 [Contig_View]  PLSCR2 [Vega]
ICGC DataPortalENSG00000163746
TCGA cBioPortalPLSCR2
AceView (NCBI)PLSCR2
Genatlas (Paris)PLSCR2
WikiGenes57047
SOURCE (Princeton)PLSCR2
Genetics Home Reference (NIH)PLSCR2
Genomic and cartography
GoldenPath hg38 (UCSC)PLSCR2  -     chr3:146433288-146469301 -  3q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLSCR2  -     3q24   [Description]    (hg19-Feb_2009)
EnsemblPLSCR2 - 3q24 [CytoView hg19]  PLSCR2 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIPLSCR2 [Mapview hg19]  PLSCR2 [Mapview hg38]
OMIM607610   
Gene and transcription
Genbank (Entrez)AA813518 AF159441 AK301909 BC055415 BC069785
RefSeq transcript (Entrez)NM_001199978 NM_001199979 NM_020359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLSCR2
Cluster EST : UnigeneHs.744414 [ NCBI ]
CGAP (NCI)Hs.744414
Alternative Splicing GalleryENSG00000163746
Gene ExpressionPLSCR2 [ NCBI-GEO ]   PLSCR2 [ EBI - ARRAY_EXPRESS ]   PLSCR2 [ SEEK ]   PLSCR2 [ MEM ]
Gene Expression Viewer (FireBrowse)PLSCR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57047
GTEX Portal (Tissue expression)PLSCR2
Human Protein AtlasENSG00000163746-PLSCR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRY7
Splice isoforms : SwissVarQ9NRY7
PhosPhoSitePlusQ9NRY7
Domains : Interpro (EBI)Scramblase   
Domain families : Pfam (Sanger)Scramblase (PF03803)   
Domain families : Pfam (NCBI)pfam03803   
Conserved Domain (NCBI)PLSCR2
DMDM Disease mutations57047
Blocks (Seattle)PLSCR2
SuperfamilyQ9NRY7
Human Protein Atlas [tissue]ENSG00000163746-PLSCR2 [tissue]
Peptide AtlasQ9NRY7
HPRD09621
IPIIPI00016940   IPI00946560   IPI00945568   IPI00945137   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRY7
IntAct (EBI)Q9NRY7
FunCoupENSG00000163746
BioGRIDPLSCR2
STRING (EMBL)PLSCR2
ZODIACPLSCR2
Ontologies - Pathways
QuickGOQ9NRY7
Ontology : AmiGOcalcium ion binding  nucleus  plasma membrane  plasma membrane  integral component of membrane  phospholipid scrambling  phospholipid scramblase activity  phospholipid scramblase activity  
Ontology : EGO-EBIcalcium ion binding  nucleus  plasma membrane  plasma membrane  integral component of membrane  phospholipid scrambling  phospholipid scramblase activity  phospholipid scramblase activity  
NDEx NetworkPLSCR2
Atlas of Cancer Signalling NetworkPLSCR2
Wikipedia pathwaysPLSCR2
Orthology - Evolution
OrthoDB57047
GeneTree (enSembl)ENSG00000163746
Phylogenetic Trees/Animal Genes : TreeFamPLSCR2
HOVERGENQ9NRY7
HOGENOMQ9NRY7
Homologs : HomoloGenePLSCR2
Homology/Alignments : Family Browser (UCSC)PLSCR2
Gene fusions - Rearrangements
Tumor Fusion PortalPLSCR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLSCR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLSCR2
dbVarPLSCR2
ClinVarPLSCR2
1000_GenomesPLSCR2 
Exome Variant ServerPLSCR2
ExAC (Exome Aggregation Consortium)ENSG00000163746
GNOMAD BrowserENSG00000163746
Genetic variants : HAPMAP57047
Genomic Variants (DGV)PLSCR2 [DGVbeta]
DECIPHERPLSCR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLSCR2 
Mutations
ICGC Data PortalPLSCR2 
TCGA Data PortalPLSCR2 
Broad Tumor PortalPLSCR2
OASIS PortalPLSCR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLSCR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLSCR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLSCR2
DgiDB (Drug Gene Interaction Database)PLSCR2
DoCM (Curated mutations)PLSCR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLSCR2 (select a term)
intoGenPLSCR2
Cancer3DPLSCR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607610   
Orphanet
DisGeNETPLSCR2
MedgenPLSCR2
Genetic Testing Registry PLSCR2
NextProtQ9NRY7 [Medical]
TSGene57047
GENETestsPLSCR2
Target ValidationPLSCR2
Huge Navigator PLSCR2 [HugePedia]
snp3D : Map Gene to Disease57047
BioCentury BCIQPLSCR2
ClinGenPLSCR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57047
Chemical/Pharm GKB GenePA33420
Clinical trialPLSCR2
Miscellaneous
canSAR (ICR)PLSCR2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLSCR2
EVEXPLSCR2
GoPubMedPLSCR2
iHOPPLSCR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:08:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.