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PLSCR3 (phospholipid scramblase 3)

Identity

Other alias-
HGNC (Hugo) PLSCR3
LocusID (NCBI) 57048
Atlas_Id 72007
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7389728 and ends at 7394843 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLSCR3   16495
Cards
Entrez_Gene (NCBI)PLSCR3  57048  phospholipid scramblase 3
Aliases
GeneCards (Weizmann)PLSCR3
Ensembl hg19 (Hinxton)ENSG00000187838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187838 [Gene_View]  chr17:7389728-7394843 [Contig_View]  PLSCR3 [Vega]
ICGC DataPortalENSG00000187838
TCGA cBioPortalPLSCR3
AceView (NCBI)PLSCR3
Genatlas (Paris)PLSCR3
WikiGenes57048
SOURCE (Princeton)PLSCR3
Genetics Home Reference (NIH)PLSCR3
Genomic and cartography
GoldenPath hg38 (UCSC)PLSCR3  -     chr17:7389728-7394843 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLSCR3  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblPLSCR3 - 17p13.1 [CytoView hg19]  PLSCR3 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIPLSCR3 [Mapview hg19]  PLSCR3 [Mapview hg38]
OMIM607611   
Gene and transcription
Genbank (Entrez)AF159442 AF289602 AK075188 AK098229 AK124006
RefSeq transcript (Entrez)NM_001201576 NM_020360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLSCR3
Cluster EST : UnigeneHs.736428 [ NCBI ]
CGAP (NCI)Hs.736428
Alternative Splicing GalleryENSG00000187838
Gene ExpressionPLSCR3 [ NCBI-GEO ]   PLSCR3 [ EBI - ARRAY_EXPRESS ]   PLSCR3 [ SEEK ]   PLSCR3 [ MEM ]
Gene Expression Viewer (FireBrowse)PLSCR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57048
GTEX Portal (Tissue expression)PLSCR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRY6
Splice isoforms : SwissVarQ9NRY6
PhosPhoSitePlusQ9NRY6
Domains : Interpro (EBI)Scramblase   
Domain families : Pfam (Sanger)Scramblase (PF03803)   
Domain families : Pfam (NCBI)pfam03803   
Conserved Domain (NCBI)PLSCR3
DMDM Disease mutations57048
Blocks (Seattle)PLSCR3
SuperfamilyQ9NRY6
Human Protein AtlasENSG00000187838
Peptide AtlasQ9NRY6
HPRD07400
IPIIPI00914931   IPI00216127   IPI00383321   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRY6
IntAct (EBI)Q9NRY6
FunCoupENSG00000187838
BioGRIDPLSCR3
STRING (EMBL)PLSCR3
ZODIACPLSCR3
Ontologies - Pathways
QuickGOQ9NRY6
Ontology : AmiGOcalcium ion binding  protein binding  mitochondrion  plasma membrane  plasma membrane  apoptotic process  integral component of membrane  phospholipid scrambling  SH3 domain binding  phospholipid scramblase activity  phospholipid scramblase activity  mitochondrial membrane  glucose homeostasis  cholesterol homeostasis  calcium-dependent protein binding  cellular response to lipopolysaccharide  
Ontology : EGO-EBIcalcium ion binding  protein binding  mitochondrion  plasma membrane  plasma membrane  apoptotic process  integral component of membrane  phospholipid scrambling  SH3 domain binding  phospholipid scramblase activity  phospholipid scramblase activity  mitochondrial membrane  glucose homeostasis  cholesterol homeostasis  calcium-dependent protein binding  cellular response to lipopolysaccharide  
NDEx NetworkPLSCR3
Atlas of Cancer Signalling NetworkPLSCR3
Wikipedia pathwaysPLSCR3
Orthology - Evolution
OrthoDB57048
GeneTree (enSembl)ENSG00000187838
Phylogenetic Trees/Animal Genes : TreeFamPLSCR3
HOVERGENQ9NRY6
HOGENOMQ9NRY6
Homologs : HomoloGenePLSCR3
Homology/Alignments : Family Browser (UCSC)PLSCR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLSCR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLSCR3
dbVarPLSCR3
ClinVarPLSCR3
1000_GenomesPLSCR3 
Exome Variant ServerPLSCR3
ExAC (Exome Aggregation Consortium)PLSCR3 (select the gene name)
Genetic variants : HAPMAP57048
Genomic Variants (DGV)PLSCR3 [DGVbeta]
DECIPHERPLSCR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLSCR3 
Mutations
ICGC Data PortalPLSCR3 
TCGA Data PortalPLSCR3 
Broad Tumor PortalPLSCR3
OASIS PortalPLSCR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLSCR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLSCR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLSCR3
DgiDB (Drug Gene Interaction Database)PLSCR3
DoCM (Curated mutations)PLSCR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLSCR3 (select a term)
intoGenPLSCR3
Cancer3DPLSCR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607611   
Orphanet
MedgenPLSCR3
Genetic Testing Registry PLSCR3
NextProtQ9NRY6 [Medical]
TSGene57048
GENETestsPLSCR3
Target ValidationPLSCR3
Huge Navigator PLSCR3 [HugePedia]
snp3D : Map Gene to Disease57048
BioCentury BCIQPLSCR3
ClinGenPLSCR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57048
Chemical/Pharm GKB GenePA33421
Clinical trialPLSCR3
Miscellaneous
canSAR (ICR)PLSCR3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLSCR3
EVEXPLSCR3
GoPubMedPLSCR3
iHOPPLSCR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:48 CEST 2017

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