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PLSCR5 (phospholipid scramblase family, member 5)

Identity

Alias_namesphospholipid scramblase family, member 5
Other alias-
HGNC (Hugo) PLSCR5
LocusID (NCBI) 389158
Atlas_Id 72009
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 146303625 and ends at 146324003 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLSCR5   19952
Cards
Entrez_Gene (NCBI)PLSCR5  389158  phospholipid scramblase family, member 5
Aliases
GeneCards (Weizmann)PLSCR5
Ensembl hg19 (Hinxton)ENSG00000231213 [Gene_View]  chr3:146303625-146324003 [Contig_View]  PLSCR5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000231213 [Gene_View]  chr3:146303625-146324003 [Contig_View]  PLSCR5 [Vega]
ICGC DataPortalENSG00000231213
TCGA cBioPortalPLSCR5
AceView (NCBI)PLSCR5
Genatlas (Paris)PLSCR5
WikiGenes389158
SOURCE (Princeton)PLSCR5
Genetics Home Reference (NIH)PLSCR5
Genomic and cartography
GoldenPath hg19 (UCSC)PLSCR5  -     chr3:146303625-146324003 -  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PLSCR5  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblPLSCR5 - 3q24 [CytoView hg19]  PLSCR5 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIPLSCR5 [Mapview hg19]  PLSCR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY436642 BC157886 BC171917
RefSeq transcript (Entrez)NM_001085420
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)PLSCR5
Cluster EST : UnigeneHs.254692 [ NCBI ]
CGAP (NCI)Hs.254692
Alternative Splicing GalleryENSG00000231213
Gene ExpressionPLSCR5 [ NCBI-GEO ]   PLSCR5 [ EBI - ARRAY_EXPRESS ]   PLSCR5 [ SEEK ]   PLSCR5 [ MEM ]
Gene Expression Viewer (FireBrowse)PLSCR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389158
GTEX Portal (Tissue expression)PLSCR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PG75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PG75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PG75
Splice isoforms : SwissVarA0PG75
PhosPhoSitePlusA0PG75
Domains : Interpro (EBI)Scramblase    Tubby_C-like   
Domain families : Pfam (Sanger)Scramblase (PF03803)   
Domain families : Pfam (NCBI)pfam03803   
Conserved Domain (NCBI)PLSCR5
DMDM Disease mutations389158
Blocks (Seattle)PLSCR5
SuperfamilyA0PG75
Human Protein AtlasENSG00000231213
Peptide AtlasA0PG75
IPIIPI00374235   IPI00945082   
Protein Interaction databases
DIP (DOE-UCLA)A0PG75
IntAct (EBI)A0PG75
FunCoupENSG00000231213
BioGRIDPLSCR5
STRING (EMBL)PLSCR5
ZODIACPLSCR5
Ontologies - Pathways
QuickGOA0PG75
Ontology : AmiGOplasma membrane  phospholipid scrambling  phospholipid scramblase activity  
Ontology : EGO-EBIplasma membrane  phospholipid scrambling  phospholipid scramblase activity  
NDEx NetworkPLSCR5
Atlas of Cancer Signalling NetworkPLSCR5
Wikipedia pathwaysPLSCR5
Orthology - Evolution
OrthoDB389158
GeneTree (enSembl)ENSG00000231213
Phylogenetic Trees/Animal Genes : TreeFamPLSCR5
HOVERGENA0PG75
HOGENOMA0PG75
Homologs : HomoloGenePLSCR5
Homology/Alignments : Family Browser (UCSC)PLSCR5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLSCR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLSCR5
dbVarPLSCR5
ClinVarPLSCR5
1000_GenomesPLSCR5 
Exome Variant ServerPLSCR5
ExAC (Exome Aggregation Consortium)PLSCR5 (select the gene name)
Genetic variants : HAPMAP389158
Genomic Variants (DGV)PLSCR5 [DGVbeta]
DECIPHER (Syndromes)3:146303625-146324003  ENSG00000231213
CONAN: Copy Number AnalysisPLSCR5 
Mutations
ICGC Data PortalPLSCR5 
TCGA Data PortalPLSCR5 
Broad Tumor PortalPLSCR5
OASIS PortalPLSCR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLSCR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLSCR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLSCR5
DgiDB (Drug Gene Interaction Database)PLSCR5
DoCM (Curated mutations)PLSCR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLSCR5 (select a term)
intoGenPLSCR5
Cancer3DPLSCR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPLSCR5
Genetic Testing Registry PLSCR5
NextProtA0PG75 [Medical]
TSGene389158
GENETestsPLSCR5
Huge Navigator PLSCR5 [HugePedia]
snp3D : Map Gene to Disease389158
BioCentury BCIQPLSCR5
ClinGenPLSCR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389158
Chemical/Pharm GKB GenePA134902268
Clinical trialPLSCR5
Miscellaneous
canSAR (ICR)PLSCR5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLSCR5
EVEXPLSCR5
GoPubMedPLSCR5
iHOPPLSCR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:00 CET 2017

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