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PLTP (phospholipid transfer protein)

Identity

Alias_symbol (synonym)BPIFE
Other aliasHDLCQ9
HGNC (Hugo) PLTP
LocusID (NCBI) 5360
Atlas_Id 51749
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45898620 and ends at 45912364 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLTP   9093
Cards
Entrez_Gene (NCBI)PLTP  5360  phospholipid transfer protein
AliasesBPIFE; HDLCQ9
GeneCards (Weizmann)PLTP
Ensembl hg19 (Hinxton)ENSG00000100979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100979 [Gene_View]  chr20:45898620-45912364 [Contig_View]  PLTP [Vega]
ICGC DataPortalENSG00000100979
TCGA cBioPortalPLTP
AceView (NCBI)PLTP
Genatlas (Paris)PLTP
WikiGenes5360
SOURCE (Princeton)PLTP
Genetics Home Reference (NIH)PLTP
Genomic and cartography
GoldenPath hg38 (UCSC)PLTP  -     chr20:45898620-45912364 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLTP  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblPLTP - 20q13.12 [CytoView hg19]  PLTP - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIPLTP [Mapview hg19]  PLTP [Mapview hg38]
OMIM172425   
Gene and transcription
Genbank (Entrez)AB076694 AF052157 AK092397 AK092523 AK097009
RefSeq transcript (Entrez)NM_001242920 NM_001242921 NM_006227 NM_182676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLTP
Cluster EST : UnigeneHs.439312 [ NCBI ]
CGAP (NCI)Hs.439312
Alternative Splicing GalleryENSG00000100979
Gene ExpressionPLTP [ NCBI-GEO ]   PLTP [ EBI - ARRAY_EXPRESS ]   PLTP [ SEEK ]   PLTP [ MEM ]
Gene Expression Viewer (FireBrowse)PLTP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5360
GTEX Portal (Tissue expression)PLTP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55058   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55058  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55058
Splice isoforms : SwissVarP55058
PhosPhoSitePlusP55058
Domaine pattern : Prosite (Expaxy)LBP_BPI_CETP (PS00400)   
Domains : Interpro (EBI)Bactericidal_perm-incr_a/b_dom    BPI/LBP    BPI/LBP/Plunc    Lipid-bd_serum_glycop_C    Lipid-bd_serum_glycop_CS    Lipid-bd_serum_glycop_N    PLTP   
Domain families : Pfam (Sanger)LBP_BPI_CETP (PF01273)    LBP_BPI_CETP_C (PF02886)   
Domain families : Pfam (NCBI)pfam01273    pfam02886   
Domain families : Smart (EMBL)BPI1 (SM00328)  BPI2 (SM00329)  
Conserved Domain (NCBI)PLTP
DMDM Disease mutations5360
Blocks (Seattle)PLTP
SuperfamilyP55058
Human Protein AtlasENSG00000100979
Peptide AtlasP55058
HPRD01399
IPIIPI01010596   IPI00217778   IPI00643034   IPI00022733   IPI00909702   
Protein Interaction databases
DIP (DOE-UCLA)P55058
IntAct (EBI)P55058
FunCoupENSG00000100979
BioGRIDPLTP
STRING (EMBL)PLTP
ZODIACPLTP
Ontologies - Pathways
QuickGOP55058
Ontology : AmiGOextracellular region  extracellular space  lipid metabolic process  lipid transport  lipid binding  vitamin E biosynthetic process  positive regulation of cholesterol efflux  flagellated sperm motility  high-density lipoprotein particle remodeling  
Ontology : EGO-EBIextracellular region  extracellular space  lipid metabolic process  lipid transport  lipid binding  vitamin E biosynthetic process  positive regulation of cholesterol efflux  flagellated sperm motility  high-density lipoprotein particle remodeling  
Pathways : KEGGPPAR signaling pathway   
NDEx NetworkPLTP
Atlas of Cancer Signalling NetworkPLTP
Wikipedia pathwaysPLTP
Orthology - Evolution
OrthoDB5360
GeneTree (enSembl)ENSG00000100979
Phylogenetic Trees/Animal Genes : TreeFamPLTP
HOVERGENP55058
HOGENOMP55058
Homologs : HomoloGenePLTP
Homology/Alignments : Family Browser (UCSC)PLTP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPLTP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PLTP
dbVarPLTP
ClinVarPLTP
1000_GenomesPLTP 
Exome Variant ServerPLTP
ExAC (Exome Aggregation Consortium)PLTP (select the gene name)
Genetic variants : HAPMAP5360
Genomic Variants (DGV)PLTP [DGVbeta]
DECIPHERPLTP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPLTP 
Mutations
ICGC Data PortalPLTP 
TCGA Data PortalPLTP 
Broad Tumor PortalPLTP
OASIS PortalPLTP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPLTP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPLTP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PLTP
DgiDB (Drug Gene Interaction Database)PLTP
DoCM (Curated mutations)PLTP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PLTP (select a term)
intoGenPLTP
Cancer3DPLTP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM172425   
Orphanet
MedgenPLTP
Genetic Testing Registry PLTP
NextProtP55058 [Medical]
TSGene5360
GENETestsPLTP
Target ValidationPLTP
Huge Navigator PLTP [HugePedia]
snp3D : Map Gene to Disease5360
BioCentury BCIQPLTP
ClinGenPLTP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5360
Chemical/Pharm GKB GenePA273
Clinical trialPLTP
Miscellaneous
canSAR (ICR)PLTP (select the gene name)
Probes
Litterature
PubMed123 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLTP
EVEXPLTP
GoPubMedPLTP
iHOPPLTP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:58 CEST 2017

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