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PLUT (PDX1 associated lncRNA, upregulator of transcription)

Identity

Alias_namesPDX1-AS1
PDX1 antisense RNA 1 (non-protein coding)
PDX1 antisense RNA 1
Alias_symbol (synonym)PLUTO
HI-LNC71
Other alias
HGNC (Hugo) PLUT
LocusID (NCBI) 100861550
Atlas_Id 79137
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27819092 and ends at 27917291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PLUT   43698
Cards
Entrez_Gene (NCBI)PLUT  100861550  PDX1 associated lncRNA, upregulator of transcription
AliasesHI-LNC71; PDX1-AS1; PLUTO
GeneCards (Weizmann)PLUT
Ensembl hg19 (Hinxton)ENSG00000247381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247381 [Gene_View]  chr13:27819092-27917291 [Contig_View]  PLUT [Vega]
ICGC DataPortalENSG00000247381
TCGA cBioPortalPLUT
AceView (NCBI)PLUT
Genatlas (Paris)PLUT
WikiGenes100861550
SOURCE (Princeton)PLUT
Genetics Home Reference (NIH)PLUT
Genomic and cartography
GoldenPath hg38 (UCSC)PLUT  -     chr13:27819092-27917291 -  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PLUT  -     13q12.2   [Description]    (hg19-Feb_2009)
EnsemblPLUT - 13q12.2 [CytoView hg19]  PLUT - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIPLUT [Mapview hg19]  PLUT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW340746 BX370281
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PLUT
Cluster EST : UnigeneHs.416201 [ NCBI ]
CGAP (NCI)Hs.416201
Alternative Splicing GalleryENSG00000247381
Gene ExpressionPLUT [ NCBI-GEO ]   PLUT [ EBI - ARRAY_EXPRESS ]   PLUT [ SEEK ]   PLUT [ MEM ]
Gene Expression Viewer (FireBrowse)PLUT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861550
GTEX Portal (Tissue expression)PLUT
Human Protein AtlasENSG00000247381-PLUT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PLUT
DMDM Disease mutations100861550
Blocks (Seattle)PLUT
Human Protein Atlas [tissue]ENSG00000247381-PLUT [tissue]
Protein Interaction databases
FunCoupENSG00000247381
BioGRIDPLUT
STRING (EMBL)PLUT
ZODIACPLUT
Ontologies - Pathways
Huge Navigator PLUT [HugePedia]
snp3D : Map Gene to Disease100861550
BioCentury BCIQPLUT
ClinGenPLUT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861550
Clinical trialPLUT
Miscellaneous
canSAR (ICR)PLUT (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePLUT
EVEXPLUT
GoPubMedPLUT
iHOPPLUT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:48 CET 2017

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