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PMCH (pro-melanin concentrating hormone)

Identity

Alias_namespro-melanin-concentrating hormone
Alias_symbol (synonym)MCH
Other aliasppMCH
HGNC (Hugo) PMCH
LocusID (NCBI) 5367
Atlas_Id 72011
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 102196459 and ends at 102197845 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMCH   9109
Cards
Entrez_Gene (NCBI)PMCH  5367  pro-melanin concentrating hormone
AliasesMCH; ppMCH
GeneCards (Weizmann)PMCH
Ensembl hg19 (Hinxton)ENSG00000183395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183395 [Gene_View]  chr12:102196459-102197845 [Contig_View]  PMCH [Vega]
ICGC DataPortalENSG00000183395
TCGA cBioPortalPMCH
AceView (NCBI)PMCH
Genatlas (Paris)PMCH
WikiGenes5367
SOURCE (Princeton)PMCH
Genetics Home Reference (NIH)PMCH
Genomic and cartography
GoldenPath hg38 (UCSC)PMCH  -     chr12:102196459-102197845 -  12q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMCH  -     12q23.2   [Description]    (hg19-Feb_2009)
EnsemblPMCH - 12q23.2 [CytoView hg19]  PMCH - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBIPMCH [Mapview hg19]  PMCH [Mapview hg38]
OMIM176795   
Gene and transcription
Genbank (Entrez)AV723033 BC018048 CB047052 CB047053 DQ892335
RefSeq transcript (Entrez)NM_002674
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMCH
Cluster EST : UnigeneHs.707990 [ NCBI ]
CGAP (NCI)Hs.707990
Alternative Splicing GalleryENSG00000183395
Gene ExpressionPMCH [ NCBI-GEO ]   PMCH [ EBI - ARRAY_EXPRESS ]   PMCH [ SEEK ]   PMCH [ MEM ]
Gene Expression Viewer (FireBrowse)PMCH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5367
GTEX Portal (Tissue expression)PMCH
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20382   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20382  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20382
Splice isoforms : SwissVarP20382
PhosPhoSitePlusP20382
Domains : Interpro (EBI)Prepro-melanin_conc_hormone   
Domain families : Pfam (Sanger)Pro-MCH (PF05824)   
Domain families : Pfam (NCBI)pfam05824   
Conserved Domain (NCBI)PMCH
DMDM Disease mutations5367
Blocks (Seattle)PMCH
SuperfamilyP20382
Human Protein AtlasENSG00000183395
Peptide AtlasP20382
HPRD01459
IPIIPI00300623   
Protein Interaction databases
DIP (DOE-UCLA)P20382
IntAct (EBI)P20382
FunCoupENSG00000183395
BioGRIDPMCH
STRING (EMBL)PMCH
ZODIACPMCH
Ontologies - Pathways
QuickGOP20382
Ontology : AmiGOextracellular region  extracellular region  nucleus  neuropeptide signaling pathway  chemical synaptic transmission  multicellular organism development  spermatogenesis  feeding behavior  cell differentiation  melanin-concentrating hormone activity  
Ontology : EGO-EBIextracellular region  extracellular region  nucleus  neuropeptide signaling pathway  chemical synaptic transmission  multicellular organism development  spermatogenesis  feeding behavior  cell differentiation  melanin-concentrating hormone activity  
NDEx NetworkPMCH
Atlas of Cancer Signalling NetworkPMCH
Wikipedia pathwaysPMCH
Orthology - Evolution
OrthoDB5367
GeneTree (enSembl)ENSG00000183395
Phylogenetic Trees/Animal Genes : TreeFamPMCH
HOVERGENP20382
HOGENOMP20382
Homologs : HomoloGenePMCH
Homology/Alignments : Family Browser (UCSC)PMCH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMCH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMCH
dbVarPMCH
ClinVarPMCH
1000_GenomesPMCH 
Exome Variant ServerPMCH
ExAC (Exome Aggregation Consortium)PMCH (select the gene name)
Genetic variants : HAPMAP5367
Genomic Variants (DGV)PMCH [DGVbeta]
DECIPHERPMCH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMCH 
Mutations
ICGC Data PortalPMCH 
TCGA Data PortalPMCH 
Broad Tumor PortalPMCH
OASIS PortalPMCH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPMCH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPMCH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMCH
DgiDB (Drug Gene Interaction Database)PMCH
DoCM (Curated mutations)PMCH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMCH (select a term)
intoGenPMCH
Cancer3DPMCH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176795   
Orphanet
MedgenPMCH
Genetic Testing Registry PMCH
NextProtP20382 [Medical]
TSGene5367
GENETestsPMCH
Target ValidationPMCH
Huge Navigator PMCH [HugePedia]
snp3D : Map Gene to Disease5367
BioCentury BCIQPMCH
ClinGenPMCH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5367
Chemical/Pharm GKB GenePA33435
Clinical trialPMCH
Miscellaneous
canSAR (ICR)PMCH (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMCH
EVEXPMCH
GoPubMedPMCH
iHOPPMCH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:43 CEST 2017

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