Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PMCHL1 (pro-melanin concentrating hormone like 1 (pseudogene))

Identity

Alias_namespro-melanin-concentrating hormone-like 1
pro-melanin-concentrating hormone-like 1, pseudogene
Other alias-
HGNC (Hugo) PMCHL1
LocusID (NCBI) 5369
Atlas_Id 72012
Location 5p14.3  [Link to chromosome band 5p14]
Location_base_pair Starts at 22142352 and ends at 22152270 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMCHL1   9110
Cards
Entrez_Gene (NCBI)PMCHL1  5369  pro-melanin concentrating hormone like 1 (pseudogene)
Aliases
GeneCards (Weizmann)PMCHL1
Ensembl hg19 (Hinxton)ENSG00000168967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168967 [Gene_View]  chr5:22142352-22152270 [Contig_View]  PMCHL1 [Vega]
ICGC DataPortalENSG00000168967
TCGA cBioPortalPMCHL1
AceView (NCBI)PMCHL1
Genatlas (Paris)PMCHL1
WikiGenes5369
SOURCE (Princeton)PMCHL1
Genetics Home Reference (NIH)PMCHL1
Genomic and cartography
GoldenPath hg38 (UCSC)PMCHL1  -     chr5:22142352-22152270 +  5p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMCHL1  -     5p14.3   [Description]    (hg19-Feb_2009)
EnsemblPMCHL1 - 5p14.3 [CytoView hg19]  PMCHL1 - 5p14.3 [CytoView hg38]
Mapping of homologs : NCBIPMCHL1 [Mapview hg19]  PMCHL1 [Mapview hg38]
OMIM176793   
Gene and transcription
Genbank (Entrez)AY008407 AY008408 AY008409 AY008410 AY008411
RefSeq transcript (Entrez)NM_031887
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMCHL1
Cluster EST : UnigeneHs.247975 [ NCBI ]
CGAP (NCI)Hs.247975
Alternative Splicing GalleryENSG00000168967
Gene ExpressionPMCHL1 [ NCBI-GEO ]   PMCHL1 [ EBI - ARRAY_EXPRESS ]   PMCHL1 [ SEEK ]   PMCHL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PMCHL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5369
GTEX Portal (Tissue expression)PMCHL1
Human Protein AtlasENSG00000168967-PMCHL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16048   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16048  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16048
Splice isoforms : SwissVarQ16048
PhosPhoSitePlusQ16048
Domains : Interpro (EBI)Prepro-melanin_conc_hormone   
Domain families : Pfam (Sanger)Pro-MCH (PF05824)   
Domain families : Pfam (NCBI)pfam05824   
Conserved Domain (NCBI)PMCHL1
DMDM Disease mutations5369
Blocks (Seattle)PMCHL1
SuperfamilyQ16048
Human Protein Atlas [tissue]ENSG00000168967-PMCHL1 [tissue]
Peptide AtlasQ16048
HPRD15940
IPIIPI00937184   
Protein Interaction databases
DIP (DOE-UCLA)Q16048
IntAct (EBI)Q16048
FunCoupENSG00000168967
BioGRIDPMCHL1
STRING (EMBL)PMCHL1
ZODIACPMCHL1
Ontologies - Pathways
QuickGOQ16048
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPMCHL1
Atlas of Cancer Signalling NetworkPMCHL1
Wikipedia pathwaysPMCHL1
Orthology - Evolution
OrthoDB5369
GeneTree (enSembl)ENSG00000168967
Phylogenetic Trees/Animal Genes : TreeFamPMCHL1
HOVERGENQ16048
HOGENOMQ16048
Homologs : HomoloGenePMCHL1
Homology/Alignments : Family Browser (UCSC)PMCHL1
Gene fusions - Rearrangements
Tumor Fusion PortalPMCHL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMCHL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMCHL1
dbVarPMCHL1
ClinVarPMCHL1
1000_GenomesPMCHL1 
Exome Variant ServerPMCHL1
ExAC (Exome Aggregation Consortium)ENSG00000168967
GNOMAD BrowserENSG00000168967
Genetic variants : HAPMAP5369
Genomic Variants (DGV)PMCHL1 [DGVbeta]
DECIPHERPMCHL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMCHL1 
Mutations
ICGC Data PortalPMCHL1 
TCGA Data PortalPMCHL1 
Broad Tumor PortalPMCHL1
OASIS PortalPMCHL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMCHL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMCHL1
DgiDB (Drug Gene Interaction Database)PMCHL1
DoCM (Curated mutations)PMCHL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMCHL1 (select a term)
intoGenPMCHL1
Cancer3DPMCHL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176793   
Orphanet
DisGeNETPMCHL1
MedgenPMCHL1
Genetic Testing Registry PMCHL1
NextProtQ16048 [Medical]
TSGene5369
GENETestsPMCHL1
Target ValidationPMCHL1
Huge Navigator PMCHL1 [HugePedia]
snp3D : Map Gene to Disease5369
BioCentury BCIQPMCHL1
ClinGenPMCHL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5369
Chemical/Pharm GKB GenePA33436
Clinical trialPMCHL1
Miscellaneous
canSAR (ICR)PMCHL1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMCHL1
EVEXPMCHL1
GoPubMedPMCHL1
iHOPPMCHL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:12:51 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.