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PMCHL2 (pro-melanin-concentrating hormone-like 2, pseudogene)

Identity

Alias_namespro-melanin-concentrating hormone-like 2
pro-melanin-concentrating hormone-like 2, pseudogene
Other alias-
HGNC (Hugo) PMCHL2
LocusID (NCBI) 5370
Atlas_Id 72013
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 70671612 and ends at 70681534 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMCHL2   9111
Cards
Entrez_Gene (NCBI)PMCHL2  5370  pro-melanin-concentrating hormone-like 2, pseudogene
Aliases
GeneCards (Weizmann)PMCHL2
Ensembl hg19 (Hinxton)ENSG00000169040 [Gene_View]  chr5:70671612-70681534 [Contig_View]  PMCHL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169040 [Gene_View]  chr5:70671612-70681534 [Contig_View]  PMCHL2 [Vega]
ICGC DataPortalENSG00000169040
TCGA cBioPortalPMCHL2
AceView (NCBI)PMCHL2
Genatlas (Paris)PMCHL2
WikiGenes5370
SOURCE (Princeton)PMCHL2
Genetics Home Reference (NIH)PMCHL2
Genomic and cartography
GoldenPath hg19 (UCSC)PMCHL2  -     chr5:70671612-70681534 +  5q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PMCHL2  -     5q13.2   [Description]    (hg38-Dec_2013)
EnsemblPMCHL2 - 5q13.2 [CytoView hg19]  PMCHL2 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIPMCHL2 [Mapview hg19]  PMCHL2 [Mapview hg38]
OMIM176794   
Gene and transcription
Genbank (Entrez)AY008412 AY008413 EU921425 EU921431 EU921432
RefSeq transcript (Entrez)NM_031888 NM_153381
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NT_187651 NW_003315917 NW_004929322
Consensus coding sequences : CCDS (NCBI)PMCHL2
Cluster EST : UnigeneHs.742169 [ NCBI ]
CGAP (NCI)Hs.742169
Alternative Splicing GalleryENSG00000169040
Gene ExpressionPMCHL2 [ NCBI-GEO ]   PMCHL2 [ EBI - ARRAY_EXPRESS ]   PMCHL2 [ SEEK ]   PMCHL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PMCHL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5370
GTEX Portal (Tissue expression)PMCHL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQD1
Splice isoforms : SwissVarQ9BQD1
PhosPhoSitePlusQ9BQD1
Domains : Interpro (EBI)Prepro-melanin_conc_hormone   
Domain families : Pfam (Sanger)Pro-MCH (PF05824)   
Domain families : Pfam (NCBI)pfam05824   
Conserved Domain (NCBI)PMCHL2
DMDM Disease mutations5370
Blocks (Seattle)PMCHL2
SuperfamilyQ9BQD1
Human Protein AtlasENSG00000169040
Peptide AtlasQ9BQD1
HPRD15941
IPIIPI00028321   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQD1
IntAct (EBI)Q9BQD1
FunCoupENSG00000169040
BioGRIDPMCHL2
STRING (EMBL)PMCHL2
ZODIACPMCHL2
Ontologies - Pathways
QuickGOQ9BQD1
Ontology : AmiGOmolecular_function  cellular_component  synaptic transmission  biological_process  melanin-concentrating hormone activity  
Ontology : EGO-EBImolecular_function  cellular_component  synaptic transmission  biological_process  melanin-concentrating hormone activity  
NDEx NetworkPMCHL2
Atlas of Cancer Signalling NetworkPMCHL2
Wikipedia pathwaysPMCHL2
Orthology - Evolution
OrthoDB5370
GeneTree (enSembl)ENSG00000169040
Phylogenetic Trees/Animal Genes : TreeFamPMCHL2
HOVERGENQ9BQD1
HOGENOMQ9BQD1
Homologs : HomoloGenePMCHL2
Homology/Alignments : Family Browser (UCSC)PMCHL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMCHL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMCHL2
dbVarPMCHL2
ClinVarPMCHL2
1000_GenomesPMCHL2 
Exome Variant ServerPMCHL2
ExAC (Exome Aggregation Consortium)PMCHL2 (select the gene name)
Genetic variants : HAPMAP5370
Genomic Variants (DGV)PMCHL2 [DGVbeta]
DECIPHER (Syndromes)5:70671612-70681534  ENSG00000169040
CONAN: Copy Number AnalysisPMCHL2 
Mutations
ICGC Data PortalPMCHL2 
TCGA Data PortalPMCHL2 
Broad Tumor PortalPMCHL2
OASIS PortalPMCHL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMCHL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMCHL2
DgiDB (Drug Gene Interaction Database)PMCHL2
DoCM (Curated mutations)PMCHL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMCHL2 (select a term)
intoGenPMCHL2
Cancer3DPMCHL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176794   
Orphanet
MedgenPMCHL2
Genetic Testing Registry PMCHL2
NextProtQ9BQD1 [Medical]
TSGene5370
GENETestsPMCHL2
Huge Navigator PMCHL2 [HugePedia]
snp3D : Map Gene to Disease5370
BioCentury BCIQPMCHL2
ClinGenPMCHL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5370
Chemical/Pharm GKB GenePA33437
Clinical trialPMCHL2
Miscellaneous
canSAR (ICR)PMCHL2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMCHL2
EVEXPMCHL2
GoPubMedPMCHL2
iHOPPMCHL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:01 CET 2017

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