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PMCHL2 (pro-melanin concentrating hormone like 2 (pseudogene))

Identity

Alias (NCBI)-
HGNC (Hugo) PMCHL2
HGNC Previous namepro-melanin-concentrating hormone-like 2
 pro-melanin-concentrating hormone-like 2, pseudogene
LocusID (NCBI) 5370
Atlas_Id 72013
Location 5q13.2  [Link to chromosome band 5q13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PMCHL2   9111
Cards
Entrez_Gene (NCBI)PMCHL2    pro-melanin concentrating hormone like 2 (pseudogene)
Aliases
GeneCards (Weizmann)PMCHL2
Ensembl hg19 (Hinxton)ENSG00000169040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169040 [Gene_View]  ENSG00000169040 [Sequence]  - [Contig_View]  PMCHL2 [Vega]
ICGC DataPortalENSG00000169040
TCGA cBioPortalPMCHL2
AceView (NCBI)PMCHL2
Genatlas (Paris)PMCHL2
SOURCE (Princeton)PMCHL2
Genetics Home Reference (NIH)PMCHL2
Genomic and cartography
GoldenPath hg38 (UCSC)PMCHL2  -  
GoldenPath hg19 (UCSC)PMCHL2  -  
GoldenPathPMCHL2 - [CytoView hg19]  PMCHL2 - [CytoView hg38]
ImmunoBaseENSG00000169040
Genome Data Viewer NCBIPMCHL2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AY008412 AY008413 EU921425 EU921431 EU921432
RefSeq transcript (Entrez)NM_031888 NM_153381
Consensus coding sequences : CCDS (NCBI)PMCHL2
Gene ExpressionPMCHL2 [ NCBI-GEO ]   PMCHL2 [ EBI - ARRAY_EXPRESS ]   PMCHL2 [ SEEK ]   PMCHL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PMCHL2 [ Firebrowse - Broad ]
GenevisibleExpression of PMCHL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5370
GTEX Portal (Tissue expression)PMCHL2
Human Protein AtlasENSG00000169040-PMCHL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQD1
PhosPhoSitePlusQ9BQD1
Domains : Interpro (EBI)Prepro-melanin_conc_hormone   
Domain families : Pfam (Sanger)Pro-MCH (PF05824)   
Domain families : Pfam (NCBI)pfam05824   
Conserved Domain (NCBI)PMCHL2
SuperfamilyQ9BQD1
AlphaFold pdb e-kbQ9BQD1   
Human Protein Atlas [tissue]ENSG00000169040-PMCHL2 [tissue]
HPRD15941
Protein Interaction databases
DIP (DOE-UCLA)Q9BQD1
IntAct (EBI)Q9BQD1
BioGRIDPMCHL2
STRING (EMBL)PMCHL2
ZODIACPMCHL2
Ontologies - Pathways
QuickGOQ9BQD1
Ontology : AmiGOmolecular_function  cellular_component  signal transduction  chemical synaptic transmission  behavior  biological_process  melanin-concentrating hormone activity  type 1 melanin-concentrating hormone receptor binding  synapse  
Ontology : EGO-EBImolecular_function  cellular_component  signal transduction  chemical synaptic transmission  behavior  biological_process  melanin-concentrating hormone activity  type 1 melanin-concentrating hormone receptor binding  synapse  
NDEx NetworkPMCHL2
Atlas of Cancer Signalling NetworkPMCHL2
Wikipedia pathwaysPMCHL2
Orthology - Evolution
OrthoDB5370
GeneTree (enSembl)ENSG00000169040
Phylogenetic Trees/Animal Genes : TreeFamPMCHL2
Homologs : HomoloGenePMCHL2
Homology/Alignments : Family Browser (UCSC)PMCHL2
Gene fusions - Rearrangements
Fusion : QuiverPMCHL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMCHL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMCHL2
dbVarPMCHL2
ClinVarPMCHL2
MonarchPMCHL2
1000_GenomesPMCHL2 
Exome Variant ServerPMCHL2
GNOMAD BrowserENSG00000169040
Varsome BrowserPMCHL2
ACMGPMCHL2 variants
VarityQ9BQD1
Genomic Variants (DGV)PMCHL2 [DGVbeta]
DECIPHERPMCHL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMCHL2 
Mutations
ICGC Data PortalPMCHL2 
TCGA Data PortalPMCHL2 
Broad Tumor PortalPMCHL2
OASIS PortalPMCHL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMCHL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPMCHL2
DgiDB (Drug Gene Interaction Database)PMCHL2
DoCM (Curated mutations)PMCHL2
CIViC (Clinical Interpretations of Variants in Cancer)PMCHL2
Cancer3DPMCHL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPMCHL2
MedgenPMCHL2
Genetic Testing Registry PMCHL2
NextProtQ9BQD1 [Medical]
GENETestsPMCHL2
Target ValidationPMCHL2
Huge Navigator PMCHL2 [HugePedia]
ClinGenPMCHL2
Clinical trials, drugs, therapy
MyCancerGenomePMCHL2
Protein Interactions : CTDPMCHL2
Pharm GKB GenePA33437
PharosQ9BQD1
Clinical trialPMCHL2
Miscellaneous
canSAR (ICR)PMCHL2
HarmonizomePMCHL2
ARCHS4PMCHL2
DataMed IndexPMCHL2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPMCHL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:20:03 CET 2022

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