Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PMF1-BGLAP (PMF1-BGLAP readthrough)

Identity

Other aliasPMF1
HGNC (Hugo) PMF1-BGLAP
LocusID (NCBI) 100527963
Atlas_Id 72014
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156212988 and ends at 156243332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PMF1-BGLAP (1q22) / DDX42 (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMF1-BGLAP   42953
Cards
Entrez_Gene (NCBI)PMF1-BGLAP  100527963  PMF1-BGLAP readthrough
AliasesPMF1
GeneCards (Weizmann)PMF1-BGLAP
Ensembl hg19 (Hinxton)ENSG00000260238 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260238 [Gene_View]  chr1:156212988-156243332 [Contig_View]  PMF1-BGLAP [Vega]
ICGC DataPortalENSG00000260238
TCGA cBioPortalPMF1-BGLAP
AceView (NCBI)PMF1-BGLAP
Genatlas (Paris)PMF1-BGLAP
WikiGenes100527963
SOURCE (Princeton)PMF1-BGLAP
Genetics Home Reference (NIH)PMF1-BGLAP
Genomic and cartography
GoldenPath hg38 (UCSC)PMF1-BGLAP  -     chr1:156212988-156243332 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMF1-BGLAP  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblPMF1-BGLAP - 1q22 [CytoView hg19]  PMF1-BGLAP - 1q22 [CytoView hg38]
Mapping of homologs : NCBIPMF1-BGLAP [Mapview hg19]  PMF1-BGLAP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033656 CD049192 CD388852 DQ890582 DQ893741
RefSeq transcript (Entrez)NM_001199661 NM_001199662 NM_001199663 NM_001199664
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMF1-BGLAP
Cluster EST : UnigeneHs.654541 [ NCBI ]
CGAP (NCI)Hs.654541
Alternative Splicing GalleryENSG00000260238
Gene ExpressionPMF1-BGLAP [ NCBI-GEO ]   PMF1-BGLAP [ EBI - ARRAY_EXPRESS ]   PMF1-BGLAP [ SEEK ]   PMF1-BGLAP [ MEM ]
Gene Expression Viewer (FireBrowse)PMF1-BGLAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100527963
GTEX Portal (Tissue expression)PMF1-BGLAP
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMF1-BGLAP
DMDM Disease mutations100527963
Blocks (Seattle)PMF1-BGLAP
Human Protein AtlasENSG00000260238
IPIIPI00178359   IPI00513817   
Protein Interaction databases
FunCoupENSG00000260238
BioGRIDPMF1-BGLAP
STRING (EMBL)PMF1-BGLAP
ZODIACPMF1-BGLAP
Ontologies - Pathways
Huge Navigator PMF1-BGLAP [HugePedia]
snp3D : Map Gene to Disease100527963
BioCentury BCIQPMF1-BGLAP
ClinGenPMF1-BGLAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100527963
Clinical trialPMF1-BGLAP
Miscellaneous
canSAR (ICR)PMF1-BGLAP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMF1-BGLAP
EVEXPMF1-BGLAP
GoPubMedPMF1-BGLAP
iHOPPMF1-BGLAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:44 CEST 2017

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