Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PMF1 (polyamine modulated factor 1)

Identity

Other alias-
HGNC (Hugo) PMF1
LocusID (NCBI) 11243
Atlas_Id 50610
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156212988 and ends at 156240077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IRF4 (6p25.3) / PMF1 (1q22)PMF1 (1q22) / EEF1D (8q24.3)SLC25A44 (1q22) / PMF1 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMF1   9112
Cards
Entrez_Gene (NCBI)PMF1  11243  polyamine modulated factor 1
Aliases
GeneCards (Weizmann)PMF1
Ensembl hg19 (Hinxton)ENSG00000160783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160783 [Gene_View]  chr1:156212988-156240077 [Contig_View]  PMF1 [Vega]
ICGC DataPortalENSG00000160783
TCGA cBioPortalPMF1
AceView (NCBI)PMF1
Genatlas (Paris)PMF1
WikiGenes11243
SOURCE (Princeton)PMF1
Genetics Home Reference (NIH)PMF1
Genomic and cartography
GoldenPath hg38 (UCSC)PMF1  -     chr1:156212988-156240077 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMF1  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblPMF1 - 1q22 [CytoView hg19]  PMF1 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIPMF1 [Mapview hg19]  PMF1 [Mapview hg38]
OMIM609176   
Gene and transcription
Genbank (Entrez)AF141310 AK022523 AK124646 AK289490 AK290260
RefSeq transcript (Entrez)NM_001199653 NM_001199654 NM_007221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMF1
Cluster EST : UnigeneHs.530479 [ NCBI ]
CGAP (NCI)Hs.530479
Alternative Splicing GalleryENSG00000160783
Gene ExpressionPMF1 [ NCBI-GEO ]   PMF1 [ EBI - ARRAY_EXPRESS ]   PMF1 [ SEEK ]   PMF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PMF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11243
GTEX Portal (Tissue expression)PMF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1K2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1K2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1K2
Splice isoforms : SwissVarQ6P1K2
PhosPhoSitePlusQ6P1K2
Domains : Interpro (EBI)PMF1/NNF1   
Domain families : Pfam (Sanger)Nnf1 (PF03980)   
Domain families : Pfam (NCBI)pfam03980   
Conserved Domain (NCBI)PMF1
DMDM Disease mutations11243
Blocks (Seattle)PMF1
PDB (SRS)5LSJ    5LSK   
PDB (PDBSum)5LSJ    5LSK   
PDB (IMB)5LSJ    5LSK   
PDB (RSDB)5LSJ    5LSK   
Structural Biology KnowledgeBase5LSJ    5LSK   
SCOP (Structural Classification of Proteins)5LSJ    5LSK   
CATH (Classification of proteins structures)5LSJ    5LSK   
SuperfamilyQ6P1K2
Human Protein AtlasENSG00000160783
Peptide AtlasQ6P1K2
HPRD11441
IPIIPI00549361   IPI00514558   IPI00784746   IPI00446176   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1K2
IntAct (EBI)Q6P1K2
FunCoupENSG00000160783
BioGRIDPMF1
STRING (EMBL)PMF1
ZODIACPMF1
Ontologies - Pathways
QuickGOQ6P1K2
Ontology : AmiGOMIS12/MIND type complex  transcription coactivator activity  protein binding  nucleoplasm  transcription factor complex  Golgi apparatus  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  chromosome segregation  sister chromatid cohesion  intracellular membrane-bounded organelle  leucine zipper domain binding  cell division  
Ontology : EGO-EBIMIS12/MIND type complex  transcription coactivator activity  protein binding  nucleoplasm  transcription factor complex  Golgi apparatus  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  chromosome segregation  sister chromatid cohesion  intracellular membrane-bounded organelle  leucine zipper domain binding  cell division  
NDEx NetworkPMF1
Atlas of Cancer Signalling NetworkPMF1
Wikipedia pathwaysPMF1
Orthology - Evolution
OrthoDB11243
GeneTree (enSembl)ENSG00000160783
Phylogenetic Trees/Animal Genes : TreeFamPMF1
HOVERGENQ6P1K2
HOGENOMQ6P1K2
Homologs : HomoloGenePMF1
Homology/Alignments : Family Browser (UCSC)PMF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMF1
dbVarPMF1
ClinVarPMF1
1000_GenomesPMF1 
Exome Variant ServerPMF1
ExAC (Exome Aggregation Consortium)PMF1 (select the gene name)
Genetic variants : HAPMAP11243
Genomic Variants (DGV)PMF1 [DGVbeta]
DECIPHERPMF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMF1 
Mutations
ICGC Data PortalPMF1 
TCGA Data PortalPMF1 
Broad Tumor PortalPMF1
OASIS PortalPMF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPMF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPMF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMF1
DgiDB (Drug Gene Interaction Database)PMF1
DoCM (Curated mutations)PMF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMF1 (select a term)
intoGenPMF1
Cancer3DPMF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609176   
Orphanet
MedgenPMF1
Genetic Testing Registry PMF1
NextProtQ6P1K2 [Medical]
TSGene11243
GENETestsPMF1
Target ValidationPMF1
Huge Navigator PMF1 [HugePedia]
snp3D : Map Gene to Disease11243
BioCentury BCIQPMF1
ClinGenPMF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11243
Chemical/Pharm GKB GenePA33438
Clinical trialPMF1
Miscellaneous
canSAR (ICR)PMF1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMF1
EVEXPMF1
GoPubMedPMF1
iHOPPMF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:11:00 CEST 2017

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