Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PMFBP1 (polyamine modulated factor 1 binding protein 1)

Identity

Other alias-
HGNC (Hugo) PMFBP1
LocusID (NCBI) 83449
Atlas_Id 72015
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 72119097 and ends at 72172450 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CYB5B (16q22.1) / PMFBP1 (16q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMFBP1   17728
Cards
Entrez_Gene (NCBI)PMFBP1  83449  polyamine modulated factor 1 binding protein 1
Aliases
GeneCards (Weizmann)PMFBP1
Ensembl hg19 (Hinxton)ENSG00000118557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118557 [Gene_View]  chr16:72119097-72172450 [Contig_View]  PMFBP1 [Vega]
ICGC DataPortalENSG00000118557
TCGA cBioPortalPMFBP1
AceView (NCBI)PMFBP1
Genatlas (Paris)PMFBP1
WikiGenes83449
SOURCE (Princeton)PMFBP1
Genetics Home Reference (NIH)PMFBP1
Genomic and cartography
GoldenPath hg38 (UCSC)PMFBP1  -     chr16:72119097-72172450 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMFBP1  -     16q22.2   [Description]    (hg19-Feb_2009)
EnsemblPMFBP1 - 16q22.2 [CytoView hg19]  PMFBP1 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBIPMFBP1 [Mapview hg19]  PMFBP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF239683 AK093285 AK097465 AK122925 AK315004
RefSeq transcript (Entrez)NM_001160213 NM_031293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMFBP1
Cluster EST : UnigeneHs.714939 [ NCBI ]
CGAP (NCI)Hs.714939
Alternative Splicing GalleryENSG00000118557
Gene ExpressionPMFBP1 [ NCBI-GEO ]   PMFBP1 [ EBI - ARRAY_EXPRESS ]   PMFBP1 [ SEEK ]   PMFBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PMFBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83449
GTEX Portal (Tissue expression)PMFBP1
Human Protein AtlasENSG00000118557-PMFBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBY8
Splice isoforms : SwissVarQ8TBY8
PhosPhoSitePlusQ8TBY8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMFBP1
DMDM Disease mutations83449
Blocks (Seattle)PMFBP1
SuperfamilyQ8TBY8
Human Protein Atlas [tissue]ENSG00000118557-PMFBP1 [tissue]
Peptide AtlasQ8TBY8
HPRD10157
IPIIPI00235481   IPI00550570   IPI00480077   IPI00930676   IPI01010450   IPI01009148   IPI01019116   IPI01014532   IPI01014887   IPI01015456   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBY8
IntAct (EBI)Q8TBY8
FunCoupENSG00000118557
BioGRIDPMFBP1
STRING (EMBL)PMFBP1
ZODIACPMFBP1
Ontologies - Pathways
QuickGOQ8TBY8
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkPMFBP1
Atlas of Cancer Signalling NetworkPMFBP1
Wikipedia pathwaysPMFBP1
Orthology - Evolution
OrthoDB83449
GeneTree (enSembl)ENSG00000118557
Phylogenetic Trees/Animal Genes : TreeFamPMFBP1
HOVERGENQ8TBY8
HOGENOMQ8TBY8
Homologs : HomoloGenePMFBP1
Homology/Alignments : Family Browser (UCSC)PMFBP1
Gene fusions - Rearrangements
Fusion: Tumor Portal PMFBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMFBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMFBP1
dbVarPMFBP1
ClinVarPMFBP1
1000_GenomesPMFBP1 
Exome Variant ServerPMFBP1
ExAC (Exome Aggregation Consortium)ENSG00000118557
GNOMAD BrowserENSG00000118557
Genetic variants : HAPMAP83449
Genomic Variants (DGV)PMFBP1 [DGVbeta]
DECIPHERPMFBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMFBP1 
Mutations
ICGC Data PortalPMFBP1 
TCGA Data PortalPMFBP1 
Broad Tumor PortalPMFBP1
OASIS PortalPMFBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPMFBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPMFBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMFBP1
DgiDB (Drug Gene Interaction Database)PMFBP1
DoCM (Curated mutations)PMFBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMFBP1 (select a term)
intoGenPMFBP1
Cancer3DPMFBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPMFBP1
Genetic Testing Registry PMFBP1
NextProtQ8TBY8 [Medical]
TSGene83449
GENETestsPMFBP1
Target ValidationPMFBP1
Huge Navigator PMFBP1 [HugePedia]
snp3D : Map Gene to Disease83449
BioCentury BCIQPMFBP1
ClinGenPMFBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83449
Chemical/Pharm GKB GenePA38464
Clinical trialPMFBP1
Miscellaneous
canSAR (ICR)PMFBP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMFBP1
EVEXPMFBP1
GoPubMedPMFBP1
iHOPPMFBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:22:56 CET 2017

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