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PMP2 (peripheral myelin protein 2)

Identity

Alias_symbol (synonym)MP2
FABP8
M-FABP
Other aliasP2
HGNC (Hugo) PMP2
LocusID (NCBI) 5375
Atlas_Id 72018
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 82352564 and ends at 82359719 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMP2   9117
Cards
Entrez_Gene (NCBI)PMP2  5375  peripheral myelin protein 2
AliasesFABP8; M-FABP; MP2; P2
GeneCards (Weizmann)PMP2
Ensembl hg19 (Hinxton)ENSG00000147588 [Gene_View]  chr8:82352564-82359719 [Contig_View]  PMP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147588 [Gene_View]  chr8:82352564-82359719 [Contig_View]  PMP2 [Vega]
ICGC DataPortalENSG00000147588
TCGA cBioPortalPMP2
AceView (NCBI)PMP2
Genatlas (Paris)PMP2
WikiGenes5375
SOURCE (Princeton)PMP2
Genetics Home Reference (NIH)PMP2
Genomic and cartography
GoldenPath hg19 (UCSC)PMP2  -     chr8:82352564-82359719 -  8q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PMP2  -     8q21.13   [Description]    (hg38-Dec_2013)
EnsemblPMP2 - 8q21.13 [CytoView hg19]  PMP2 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBIPMP2 [Mapview hg19]  PMP2 [Mapview hg38]
OMIM170715   
Gene and transcription
Genbank (Entrez)AK307118 AK311758 BC034997 CF455669 CR541649
RefSeq transcript (Entrez)NM_002677
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)PMP2
Cluster EST : UnigeneHs.571512 [ NCBI ]
CGAP (NCI)Hs.571512
Alternative Splicing GalleryENSG00000147588
Gene ExpressionPMP2 [ NCBI-GEO ]   PMP2 [ EBI - ARRAY_EXPRESS ]   PMP2 [ SEEK ]   PMP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PMP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5375
GTEX Portal (Tissue expression)PMP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02689   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02689  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02689
Splice isoforms : SwissVarP02689
PhosPhoSitePlusP02689
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)PMP2
DMDM Disease mutations5375
Blocks (Seattle)PMP2
PDB (SRS)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
PDB (PDBSum)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
PDB (IMB)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
PDB (RSDB)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
Structural Biology KnowledgeBase2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
SCOP (Structural Classification of Proteins)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
CATH (Classification of proteins structures)2WUT    3NR3    4A1H    4A1Y    4A8Z    4BVM   
SuperfamilyP02689
Human Protein AtlasENSG00000147588
Peptide AtlasP02689
HPRD01366
IPIIPI00219533   IPI00974101   
Protein Interaction databases
DIP (DOE-UCLA)P02689
IntAct (EBI)P02689
FunCoupENSG00000147588
BioGRIDPMP2
STRING (EMBL)PMP2
ZODIACPMP2
Ontologies - Pathways
QuickGOP02689
Ontology : AmiGOtransporter activity  fatty acid binding  protein binding  cytoplasm  transport  cholesterol binding  membrane organization  extracellular exosome  
Ontology : EGO-EBItransporter activity  fatty acid binding  protein binding  cytoplasm  transport  cholesterol binding  membrane organization  extracellular exosome  
NDEx NetworkPMP2
Atlas of Cancer Signalling NetworkPMP2
Wikipedia pathwaysPMP2
Orthology - Evolution
OrthoDB5375
GeneTree (enSembl)ENSG00000147588
Phylogenetic Trees/Animal Genes : TreeFamPMP2
HOVERGENP02689
HOGENOMP02689
Homologs : HomoloGenePMP2
Homology/Alignments : Family Browser (UCSC)PMP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMP2
dbVarPMP2
ClinVarPMP2
1000_GenomesPMP2 
Exome Variant ServerPMP2
ExAC (Exome Aggregation Consortium)PMP2 (select the gene name)
Genetic variants : HAPMAP5375
Genomic Variants (DGV)PMP2 [DGVbeta]
DECIPHER (Syndromes)8:82352564-82359719  ENSG00000147588
CONAN: Copy Number AnalysisPMP2 
Mutations
ICGC Data PortalPMP2 
TCGA Data PortalPMP2 
Broad Tumor PortalPMP2
OASIS PortalPMP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPMP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPMP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMP2
DgiDB (Drug Gene Interaction Database)PMP2
DoCM (Curated mutations)PMP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMP2 (select a term)
intoGenPMP2
Cancer3DPMP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM170715   
Orphanet
MedgenPMP2
Genetic Testing Registry PMP2
NextProtP02689 [Medical]
TSGene5375
GENETestsPMP2
Huge Navigator PMP2 [HugePedia]
snp3D : Map Gene to Disease5375
BioCentury BCIQPMP2
ClinGenPMP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5375
Chemical/Pharm GKB GenePA33443
Clinical trialPMP2
Miscellaneous
canSAR (ICR)PMP2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMP2
EVEXPMP2
GoPubMedPMP2
iHOPPMP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:39:02 CET 2017

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