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PMS2CL (PMS2 C-terminal like pseudogene)

Identity

Alias_namesmismatch repair system component pseudogene 13
Alias_symbol (synonym)PMS2P13
Other alias
HGNC (Hugo) PMS2CL
LocusID (NCBI) 441194
Atlas_Id 50197
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6735305 and ends at 6751601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMS2CL   30061
Cards
Entrez_Gene (NCBI)PMS2CL  441194  PMS2 C-terminal like pseudogene
AliasesPMS2P13
GeneCards (Weizmann)PMS2CL
Ensembl hg19 (Hinxton)ENSG00000187953 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187953 [Gene_View]  ENSG00000187953 [Sequence]  chr7:6735305-6751601 [Contig_View]  PMS2CL [Vega]
ICGC DataPortalENSG00000187953
TCGA cBioPortalPMS2CL
AceView (NCBI)PMS2CL
Genatlas (Paris)PMS2CL
WikiGenes441194
SOURCE (Princeton)PMS2CL
Genetics Home Reference (NIH)PMS2CL
Genomic and cartography
GoldenPath hg38 (UCSC)PMS2CL  -     chr7:6735305-6751601 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMS2CL  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblPMS2CL - 7p22.1 [CytoView hg19]  PMS2CL - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIPMS2CL [Mapview hg19]  PMS2CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB116525 AK296451 BC041364 CR749616
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMS2CL
Cluster EST : UnigeneHs.715590 [ NCBI ]
CGAP (NCI)Hs.715590
Alternative Splicing GalleryENSG00000187953
Gene ExpressionPMS2CL [ NCBI-GEO ]   PMS2CL [ EBI - ARRAY_EXPRESS ]   PMS2CL [ SEEK ]   PMS2CL [ MEM ]
Gene Expression Viewer (FireBrowse)PMS2CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441194
GTEX Portal (Tissue expression)PMS2CL
Human Protein AtlasENSG00000187953-PMS2CL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D20
Splice isoforms : SwissVarQ68D20
PhosPhoSitePlusQ68D20
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMS2CL
DMDM Disease mutations441194
Blocks (Seattle)PMS2CL
SuperfamilyQ68D20
Human Protein Atlas [tissue]ENSG00000187953-PMS2CL [tissue]
Peptide AtlasQ68D20
IPIIPI00470814   
Protein Interaction databases
DIP (DOE-UCLA)Q68D20
IntAct (EBI)Q68D20
FunCoupENSG00000187953
BioGRIDPMS2CL
STRING (EMBL)PMS2CL
ZODIACPMS2CL
Ontologies - Pathways
QuickGOQ68D20
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPMS2CL
Atlas of Cancer Signalling NetworkPMS2CL
Wikipedia pathwaysPMS2CL
Orthology - Evolution
OrthoDB441194
GeneTree (enSembl)ENSG00000187953
Phylogenetic Trees/Animal Genes : TreeFamPMS2CL
HOVERGENQ68D20
HOGENOMQ68D20
Homologs : HomoloGenePMS2CL
Homology/Alignments : Family Browser (UCSC)PMS2CL
Gene fusions - Rearrangements
Fusion : QuiverPMS2CL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMS2CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMS2CL
dbVarPMS2CL
ClinVarPMS2CL
1000_GenomesPMS2CL 
Exome Variant ServerPMS2CL
ExAC (Exome Aggregation Consortium)ENSG00000187953
GNOMAD BrowserENSG00000187953
Varsome BrowserPMS2CL
Genetic variants : HAPMAP441194
Genomic Variants (DGV)PMS2CL [DGVbeta]
DECIPHERPMS2CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMS2CL 
Mutations
ICGC Data PortalPMS2CL 
TCGA Data PortalPMS2CL 
Broad Tumor PortalPMS2CL
OASIS PortalPMS2CL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMS2CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMS2CL
DgiDB (Drug Gene Interaction Database)PMS2CL
DoCM (Curated mutations)PMS2CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMS2CL (select a term)
intoGenPMS2CL
Cancer3DPMS2CL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPMS2CL
MedgenPMS2CL
Genetic Testing Registry PMS2CL
NextProtQ68D20 [Medical]
TSGene441194
GENETestsPMS2CL
Target ValidationPMS2CL
Huge Navigator PMS2CL [HugePedia]
snp3D : Map Gene to Disease441194
BioCentury BCIQPMS2CL
ClinGenPMS2CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441194
Clinical trialPMS2CL
Miscellaneous
canSAR (ICR)PMS2CL (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMS2CL
EVEXPMS2CL
GoPubMedPMS2CL
iHOPPMS2CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:30:50 CET 2018

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