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PMS2P11 (PMS1 homolog 2, mismatch repair system component pseudogene 11)

Identity

Alias_namesPMS2L11
postmeiotic segregation increased 2-like 11
postmeiotic segregation increased 2-like 11 pseudogene
postmeiotic segregation increased 2 pseudogene 11
Alias_symbol (synonym)PMSR6
Other alias
HGNC (Hugo) PMS2P11
LocusID (NCBI) 107161145
Atlas_Id 55632
Location 7q11.23  [Link to chromosome band 7q11]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PMS2P11   9125
Cards
Entrez_Gene (NCBI)PMS2P11  107161145  PMS1 homolog 2, mismatch repair system component pseudogene 11
AliasesPMS2L11; PMSR6
GeneCards (Weizmann)PMS2P11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  PMS2P11 [Vega]
TCGA cBioPortalPMS2P11
AceView (NCBI)PMS2P11
Genatlas (Paris)PMS2P11
WikiGenes107161145
SOURCE (Princeton)PMS2P11
Genetics Home Reference (NIH)PMS2P11
Genomic and cartography
GoldenPath hg38 (UCSC)PMS2P11  -  
GoldenPath hg19 (UCSC)PMS2P11  -  
EnsemblPMS2P11 - [CytoView hg19]  PMS2P11 - [CytoView hg38]
Mapping of homologs : NCBIPMS2P11 [Mapview hg19]  PMS2P11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMS2P11
Gene ExpressionPMS2P11 [ NCBI-GEO ]   PMS2P11 [ EBI - ARRAY_EXPRESS ]   PMS2P11 [ SEEK ]   PMS2P11 [ MEM ]
Gene Expression Viewer (FireBrowse)PMS2P11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)107161145
GTEX Portal (Tissue expression)PMS2P11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13670   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13670  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13670
Splice isoforms : SwissVarQ13670
PhosPhoSitePlusQ13670
Domains : Interpro (EBI)HATPase_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMS2P11
DMDM Disease mutations107161145
Blocks (Seattle)PMS2P11
SuperfamilyQ13670
Peptide AtlasQ13670
Protein Interaction databases
DIP (DOE-UCLA)Q13670
IntAct (EBI)Q13670
BioGRIDPMS2P11
STRING (EMBL)PMS2P11
ZODIACPMS2P11
Ontologies - Pathways
QuickGOQ13670
Ontology : AmiGOsingle-stranded DNA binding  mismatch repair  kinase activity  phosphorylation  somatic hypermutation of immunoglobulin genes  ATPase activity  MutLalpha complex  
Ontology : EGO-EBIsingle-stranded DNA binding  mismatch repair  kinase activity  phosphorylation  somatic hypermutation of immunoglobulin genes  ATPase activity  MutLalpha complex  
NDEx NetworkPMS2P11
Atlas of Cancer Signalling NetworkPMS2P11
Wikipedia pathwaysPMS2P11
Orthology - Evolution
OrthoDB107161145
Phylogenetic Trees/Animal Genes : TreeFamPMS2P11
HOVERGENQ13670
HOGENOMQ13670
Homologs : HomoloGenePMS2P11
Homology/Alignments : Family Browser (UCSC)PMS2P11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMS2P11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMS2P11
dbVarPMS2P11
ClinVarPMS2P11
1000_GenomesPMS2P11 
Exome Variant ServerPMS2P11
ExAC (Exome Aggregation Consortium)PMS2P11 (select the gene name)
Genetic variants : HAPMAP107161145
Genomic Variants (DGV)PMS2P11 [DGVbeta]
DECIPHERPMS2P11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMS2P11 
Mutations
ICGC Data PortalPMS2P11 
TCGA Data PortalPMS2P11 
Broad Tumor PortalPMS2P11
OASIS PortalPMS2P11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMS2P11
BioMutasearch PMS2P11
DgiDB (Drug Gene Interaction Database)PMS2P11
DoCM (Curated mutations)PMS2P11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMS2P11 (select a term)
intoGenPMS2P11
Cancer3DPMS2P11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPMS2P11
Genetic Testing Registry PMS2P11
NextProtQ13670 [Medical]
TSGene107161145
GENETestsPMS2P11
Target ValidationPMS2P11
Huge Navigator PMS2P11 [HugePedia]
snp3D : Map Gene to Disease107161145
BioCentury BCIQPMS2P11
ClinGenPMS2P11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107161145
Clinical trialPMS2P11
Miscellaneous
canSAR (ICR)PMS2P11 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMS2P11
EVEXPMS2P11
GoPubMedPMS2P11
iHOPPMS2P11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:25:25 CEST 2017

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