Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PMS2P2 (PMS1 homolog 2, mismatch repair system component pseudogene 2)

Identity

Alias_namesPMS2L2
postmeiotic segregation increased 2-like 2
postmeiotic segregation increased 2-like 2 pseudogene
postmeiotic segregation increased 2 pseudogene 2
Alias_symbol (synonym)PMS4
Other alias
HGNC (Hugo) PMS2P2
LocusID (NCBI) 5380
Atlas_Id 41757
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75343937 and ends at 75358997 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMS2P2   9127
Cards
Entrez_Gene (NCBI)PMS2P2  5380  PMS1 homolog 2, mismatch repair system component pseudogene 2
AliasesPMS2L2; PMS4
GeneCards (Weizmann)PMS2P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:75343937-75358997 [Contig_View]  PMS2P2 [Vega]
TCGA cBioPortalPMS2P2
AceView (NCBI)PMS2P2
Genatlas (Paris)PMS2P2
WikiGenes5380
SOURCE (Princeton)PMS2P2
Genetics Home Reference (NIH)PMS2P2
Genomic and cartography
GoldenPath hg38 (UCSC)PMS2P2  -     chr7:75343937-75358997 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PMS2P2  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblPMS2P2 - 7q11.23 [CytoView hg19]  PMS2P2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIPMS2P2 [Mapview hg19]  PMS2P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA282042 DA215155 DA735387
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMS2P2
Cluster EST : UnigeneHs.661055 [ NCBI ]
CGAP (NCI)Hs.661055
Gene ExpressionPMS2P2 [ NCBI-GEO ]   PMS2P2 [ EBI - ARRAY_EXPRESS ]   PMS2P2 [ SEEK ]   PMS2P2 [ MEM ]
Gene Expression Viewer (FireBrowse)PMS2P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5380
GTEX Portal (Tissue expression)PMS2P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95744   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95744  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95744
Splice isoforms : SwissVarO95744
PhosPhoSitePlusO95744
Domains : Interpro (EBI)HATPase_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMS2P2
DMDM Disease mutations5380
Blocks (Seattle)PMS2P2
SuperfamilyO95744
Peptide AtlasO95744
HPRD17865
IPIIPI00032884   IPI00873625   
Protein Interaction databases
DIP (DOE-UCLA)O95744
IntAct (EBI)O95744
BioGRIDPMS2P2
STRING (EMBL)PMS2P2
ZODIACPMS2P2
Ontologies - Pathways
QuickGOO95744
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPMS2P2
Atlas of Cancer Signalling NetworkPMS2P2
Wikipedia pathwaysPMS2P2
Orthology - Evolution
OrthoDB5380
Phylogenetic Trees/Animal Genes : TreeFamPMS2P2
HOVERGENO95744
HOGENOMO95744
Homologs : HomoloGenePMS2P2
Homology/Alignments : Family Browser (UCSC)PMS2P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMS2P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMS2P2
dbVarPMS2P2
ClinVarPMS2P2
1000_GenomesPMS2P2 
Exome Variant ServerPMS2P2
ExAC (Exome Aggregation Consortium)PMS2P2 (select the gene name)
Genetic variants : HAPMAP5380
Genomic Variants (DGV)PMS2P2 [DGVbeta]
DECIPHERPMS2P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMS2P2 
Mutations
ICGC Data PortalPMS2P2 
TCGA Data PortalPMS2P2 
Broad Tumor PortalPMS2P2
OASIS PortalPMS2P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPMS2P2
BioMutasearch PMS2P2
DgiDB (Drug Gene Interaction Database)PMS2P2
DoCM (Curated mutations)PMS2P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMS2P2 (select a term)
intoGenPMS2P2
Cancer3DPMS2P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPMS2P2
Genetic Testing Registry PMS2P2
NextProtO95744 [Medical]
TSGene5380
GENETestsPMS2P2
Target ValidationPMS2P2
Huge Navigator PMS2P2 [HugePedia]
snp3D : Map Gene to Disease5380
BioCentury BCIQPMS2P2
ClinGenPMS2P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5380
Chemical/Pharm GKB GenePA33453
Clinical trialPMS2P2
Miscellaneous
canSAR (ICR)PMS2P2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMS2P2
EVEXPMS2P2
GoPubMedPMS2P2
iHOPPMS2P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:50:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.