Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PMS2P5 (PMS1 homolog 2, mismatch repair system component pseudogene 5)

Identity

Alias_namesPMS2L5
postmeiotic segregation increased 2-like 5
postmeiotic segregation increased 2 pseudogene 5
Alias_symbol (synonym)PMS7
MGC34222
Other alias
HGNC (Hugo) PMS2P5
LocusID (NCBI) 5383
Atlas_Id 51715
Location 7q11.23  [Link to chromosome band 7q11]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PMS2P5   9130
Cards
Entrez_Gene (NCBI)PMS2P5  5383  PMS1 homolog 2, mismatch repair system component pseudogene 5
AliasesPMS2L5; PMS7
GeneCards (Weizmann)PMS2P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  PMS2P5 [Vega]
TCGA cBioPortalPMS2P5
AceView (NCBI)PMS2P5
Genatlas (Paris)PMS2P5
WikiGenes5383
SOURCE (Princeton)PMS2P5
Genetics Home Reference (NIH)PMS2P5
Genomic and cartography
GoldenPath hg38 (UCSC)PMS2P5  -  
GoldenPath hg19 (UCSC)PMS2P5  -  
EnsemblPMS2P5 - [CytoView hg19]  PMS2P5 - [CytoView hg38]
Mapping of homologs : NCBIPMS2P5 [Mapview hg19]  PMS2P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA621085 AK309660 BC027480 BC052588 BC152850
RefSeq transcript (Entrez)NM_174930
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PMS2P5
Cluster EST : UnigeneHs.647025 [ NCBI ]
CGAP (NCI)Hs.647025
Gene ExpressionPMS2P5 [ NCBI-GEO ]   PMS2P5 [ EBI - ARRAY_EXPRESS ]   PMS2P5 [ SEEK ]   PMS2P5 [ MEM ]
Gene Expression Viewer (FireBrowse)PMS2P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5383
GTEX Portal (Tissue expression)PMS2P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQ11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQ11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQ11
Splice isoforms : SwissVarA8MQ11
PhosPhoSitePlusA8MQ11
Domains : Interpro (EBI)HATPase_C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PMS2P5
DMDM Disease mutations5383
Blocks (Seattle)PMS2P5
SuperfamilyA8MQ11
Peptide AtlasA8MQ11
HPRD17867
IPIIPI00941828   IPI00935970   IPI00719639   IPI00385569   
Protein Interaction databases
DIP (DOE-UCLA)A8MQ11
IntAct (EBI)A8MQ11
BioGRIDPMS2P5
STRING (EMBL)PMS2P5
ZODIACPMS2P5
Ontologies - Pathways
QuickGOA8MQ11
Ontology : AmiGOsingle-stranded DNA binding  mismatch repair  somatic hypermutation of immunoglobulin genes  ATPase activity  MutLalpha complex  
Ontology : EGO-EBIsingle-stranded DNA binding  mismatch repair  somatic hypermutation of immunoglobulin genes  ATPase activity  MutLalpha complex  
NDEx NetworkPMS2P5
Atlas of Cancer Signalling NetworkPMS2P5
Wikipedia pathwaysPMS2P5
Orthology - Evolution
OrthoDB5383
Phylogenetic Trees/Animal Genes : TreeFamPMS2P5
HOVERGENA8MQ11
HOGENOMA8MQ11
Homologs : HomoloGenePMS2P5
Homology/Alignments : Family Browser (UCSC)PMS2P5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPMS2P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PMS2P5
dbVarPMS2P5
ClinVarPMS2P5
1000_GenomesPMS2P5 
Exome Variant ServerPMS2P5
ExAC (Exome Aggregation Consortium)PMS2P5 (select the gene name)
Genetic variants : HAPMAP5383
Genomic Variants (DGV)PMS2P5 [DGVbeta]
DECIPHERPMS2P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPMS2P5 
Mutations
ICGC Data PortalPMS2P5 
TCGA Data PortalPMS2P5 
Broad Tumor PortalPMS2P5
OASIS PortalPMS2P5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPMS2P5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPMS2P5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PMS2P5
DgiDB (Drug Gene Interaction Database)PMS2P5
DoCM (Curated mutations)PMS2P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PMS2P5 (select a term)
intoGenPMS2P5
Cancer3DPMS2P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPMS2P5
Genetic Testing Registry PMS2P5
NextProtA8MQ11 [Medical]
TSGene5383
GENETestsPMS2P5
Target ValidationPMS2P5
Huge Navigator PMS2P5 [HugePedia]
snp3D : Map Gene to Disease5383
BioCentury BCIQPMS2P5
ClinGenPMS2P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5383
Chemical/Pharm GKB GenePA33456
Clinical trialPMS2P5
Miscellaneous
canSAR (ICR)PMS2P5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePMS2P5
EVEXPMS2P5
GoPubMedPMS2P5
iHOPPMS2P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:25:26 CEST 2017

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