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PNISR (PNN interacting serine and arginine rich protein)

Identity

Alias_namesC6orf111
SFRS18
chromosome 6 open reading frame 111
splicing factor, arginine/serine-rich 18
Alias_symbol (synonym)FLJ14752
bA98I9.2
DKFZp564B0769
SRrp130
Other aliasHSPC306
HGNC (Hugo) PNISR
LocusID (NCBI) 25957
Atlas_Id 889
Location 6q16.2  [Link to chromosome band 6q16]
Location_base_pair Starts at 99398051 and ends at 99425345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PNISR (6q16.2) / PNISR (6q16.2)PNISR (6q16.2) / QRSL1 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PNISR   21222
Cards
Entrez_Gene (NCBI)PNISR  25957  PNN interacting serine and arginine rich protein
AliasesC6orf111; HSPC306; SFRS18; SRrp130; 
bA98I9.2
GeneCards (Weizmann)PNISR
Ensembl hg19 (Hinxton)ENSG00000132424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132424 [Gene_View]  ENSG00000132424 [Sequence]  chr6:99398051-99425345 [Contig_View]  PNISR [Vega]
ICGC DataPortalENSG00000132424
TCGA cBioPortalPNISR
AceView (NCBI)PNISR
Genatlas (Paris)PNISR
WikiGenes25957
SOURCE (Princeton)PNISR
Genetics Home Reference (NIH)PNISR
Genomic and cartography
GoldenPath hg38 (UCSC)PNISR  -     chr6:99398051-99425345 -  6q16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PNISR  -     6q16.2   [Description]    (hg19-Feb_2009)
EnsemblPNISR - 6q16.2 [CytoView hg19]  PNISR - 6q16.2 [CytoView hg38]
Mapping of homologs : NCBIPNISR [Mapview hg19]  PNISR [Mapview hg38]
OMIM616653   
Gene and transcription
Genbank (Entrez)AA626029 AF161379 AF161424 AF314184 AF314185
RefSeq transcript (Entrez)NM_001322405 NM_001322406 NM_001322408 NM_001322410 NM_001322412 NM_001322413 NM_001322414 NM_001322415 NM_001322416 NM_001322417 NM_001322418 NM_001322419 NM_015491 NM_032870
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PNISR
Cluster EST : UnigeneHs.710131 [ NCBI ]
CGAP (NCI)Hs.710131
Alternative Splicing GalleryENSG00000132424
Gene ExpressionPNISR [ NCBI-GEO ]   PNISR [ EBI - ARRAY_EXPRESS ]   PNISR [ SEEK ]   PNISR [ MEM ]
Gene Expression Viewer (FireBrowse)PNISR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25957
GTEX Portal (Tissue expression)PNISR
Human Protein AtlasENSG00000132424-PNISR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF01
Splice isoforms : SwissVarQ8TF01
PhosPhoSitePlusQ8TF01
Domains : Interpro (EBI)PNISR   
Domain families : Pfam (Sanger)PNISR (PF15996)   
Domain families : Pfam (NCBI)pfam15996   
Conserved Domain (NCBI)PNISR
DMDM Disease mutations25957
Blocks (Seattle)PNISR
SuperfamilyQ8TF01
Human Protein Atlas [tissue]ENSG00000132424-PNISR [tissue]
Peptide AtlasQ8TF01
HPRD10787
IPIIPI00165995   IPI00477035   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF01
IntAct (EBI)Q8TF01
FunCoupENSG00000132424
BioGRIDPNISR
STRING (EMBL)PNISR
ZODIACPNISR
Ontologies - Pathways
QuickGOQ8TF01
Ontology : AmiGORNA binding  cytosol  nuclear speck  
Ontology : EGO-EBIRNA binding  cytosol  nuclear speck  
NDEx NetworkPNISR
Atlas of Cancer Signalling NetworkPNISR
Wikipedia pathwaysPNISR
Orthology - Evolution
OrthoDB25957
GeneTree (enSembl)ENSG00000132424
Phylogenetic Trees/Animal Genes : TreeFamPNISR
HOVERGENQ8TF01
HOGENOMQ8TF01
Homologs : HomoloGenePNISR
Homology/Alignments : Family Browser (UCSC)PNISR
Gene fusions - Rearrangements
Fusion : QuiverPNISR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPNISR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PNISR
dbVarPNISR
ClinVarPNISR
1000_GenomesPNISR 
Exome Variant ServerPNISR
ExAC (Exome Aggregation Consortium)ENSG00000132424
GNOMAD BrowserENSG00000132424
Varsome BrowserPNISR
Genetic variants : HAPMAP25957
Genomic Variants (DGV)PNISR [DGVbeta]
DECIPHERPNISR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPNISR 
Mutations
ICGC Data PortalPNISR 
TCGA Data PortalPNISR 
Broad Tumor PortalPNISR
OASIS PortalPNISR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPNISR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPNISR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PNISR
DgiDB (Drug Gene Interaction Database)PNISR
DoCM (Curated mutations)PNISR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PNISR (select a term)
intoGenPNISR
Cancer3DPNISR(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616653   
Orphanet
DisGeNETPNISR
MedgenPNISR
Genetic Testing Registry PNISR
NextProtQ8TF01 [Medical]
TSGene25957
GENETestsPNISR
Target ValidationPNISR
Huge Navigator PNISR [HugePedia]
snp3D : Map Gene to Disease25957
BioCentury BCIQPNISR
ClinGenPNISR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25957
Chemical/Pharm GKB GenePA162402984
Clinical trialPNISR
Miscellaneous
canSAR (ICR)PNISR (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePNISR
EVEXPNISR
GoPubMedPNISR
iHOPPNISR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:30:55 CET 2018

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